32 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAMXP00000037604	Ig-like domain-containing protein. (189 aa)
	ENSAMXP00000038755	FISNA domain-containing protein. (834 aa)
	rc3h1	Ring finger and CCCH-type domains 1a. (1106 aa)
	ENSAMXP00000040763	Uncharacterized protein. (233 aa)
	Syk	Tyrosine-protein kinase. (631 aa)
	nfkbiz	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta. (557 aa)
	LOC103042559	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (543 aa)
	ENSAMXP00000044183	CD83 molecule. (150 aa)
	ENSAMXP00000044910	ANK_REP_REGION domain-containing protein. (265 aa)
	myb	V-myb avian myeloblastosis viral oncogene homolog. (667 aa)
	RIPK2	Receptor interacting serine/threonine kinase 2. (579 aa)
	ENSAMXP00000054408	Si:dkey-206d17.12. (289 aa)
	LOC103043058	Lysyl oxidase-like 3b. (796 aa)
	LOC103030977	Zinc finger CCCH-type containing 12A. (608 aa)
	W5K5H8_ASTMX	PR domain containing 1b, with ZNF domain. (499 aa)
	prdm1	PR domain containing 1a, with ZNF domain. (755 aa)
	loxl3	Lysyl oxidase-like 3a. (733 aa)
	LOC103040345	Ring finger and CCCH-type domains 2. (1061 aa)
	Tbx21	T-box transcription factor 21. (577 aa)
	sh3rf1	SH3 domain containing ring finger 1. (884 aa)
	hlx	H2.0-like homeo box 1 (Drosophila). (374 aa)
	malt1	MALT paracaspase 1. (803 aa)
	W5LC84_ASTMX	MALT paracaspase 3. (577 aa)
	LOC103040508	MALT paracaspase 2. (794 aa)
	W5LGZ8_ASTMX	NACHT domain-containing protein. (945 aa)
	LOC103035115	Ring finger and CCCH-type domains 1b. (1124 aa)
	tgfbr2	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (595 aa)
	cbfb	Core-binding factor subunit beta. (187 aa)
	W5LQC1_ASTMX	NACHT domain-containing protein. (919 aa)
	socs1	Suppressor of cytokine signaling 1a. (194 aa)
	sash3	SAM and SH3 domain containing 3. (383 aa)
	LOC103044019	Tyrosine-protein kinase. (612 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000040763	W5K5H8_ASTMX	ENSAMXP00000040763	ENSAMXP00000002839	Uncharacterized protein.	PR domain containing 1b, with ZNF domain.	0.569
ENSAMXP00000044183	LOC103044019	ENSAMXP00000044183	ENSAMXP00000037388	CD83 molecule.	Tyrosine-protein kinase.	0.403
ENSAMXP00000054408	nfkbiz	ENSAMXP00000054408	ENSAMXP00000042804	Si:dkey-206d17.12.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta.	0.447
LOC103030977	nfkbiz	ENSAMXP00000001771	ENSAMXP00000042804	Zinc finger CCCH-type containing 12A.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta.	0.447
LOC103035115	LOC103040345	ENSAMXP00000019814	ENSAMXP00000006962	Ring finger and CCCH-type domains 1b.	Ring finger and CCCH-type domains 2.	0.578
LOC103040345	LOC103035115	ENSAMXP00000006962	ENSAMXP00000019814	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.578
LOC103040345	rc3h1	ENSAMXP00000006962	ENSAMXP00000039649	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1a.	0.580
LOC103040508	LOC103044019	ENSAMXP00000018694	ENSAMXP00000037388	MALT paracaspase 2.	Tyrosine-protein kinase.	0.408
LOC103040508	Syk	ENSAMXP00000018694	ENSAMXP00000040943	MALT paracaspase 2.	Tyrosine-protein kinase.	0.408
LOC103040508	W5LC84_ASTMX	ENSAMXP00000018694	ENSAMXP00000017446	MALT paracaspase 2.	MALT paracaspase 3.	0.906
LOC103040508	malt1	ENSAMXP00000018694	ENSAMXP00000016513	MALT paracaspase 2.	MALT paracaspase 1.	0.903
LOC103042559	tgfbr2	ENSAMXP00000043824	ENSAMXP00000021003	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.902
LOC103044019	ENSAMXP00000044183	ENSAMXP00000037388	ENSAMXP00000044183	Tyrosine-protein kinase.	CD83 molecule.	0.403
LOC103044019	LOC103040508	ENSAMXP00000037388	ENSAMXP00000018694	Tyrosine-protein kinase.	MALT paracaspase 2.	0.408
LOC103044019	W5LC84_ASTMX	ENSAMXP00000037388	ENSAMXP00000017446	Tyrosine-protein kinase.	MALT paracaspase 3.	0.408
LOC103044019	malt1	ENSAMXP00000037388	ENSAMXP00000016513	Tyrosine-protein kinase.	MALT paracaspase 1.	0.408
LOC103044019	socs1	ENSAMXP00000037388	ENSAMXP00000026477	Tyrosine-protein kinase.	Suppressor of cytokine signaling 1a.	0.576
Syk	LOC103040508	ENSAMXP00000040943	ENSAMXP00000018694	Tyrosine-protein kinase.	MALT paracaspase 2.	0.408
Syk	W5LC84_ASTMX	ENSAMXP00000040943	ENSAMXP00000017446	Tyrosine-protein kinase.	MALT paracaspase 3.	0.408
Syk	malt1	ENSAMXP00000040943	ENSAMXP00000016513	Tyrosine-protein kinase.	MALT paracaspase 1.	0.409