25 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gsdme	Gasdermin Eb. (485 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	tomm70	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (629 aa)
	W5K380_ASTMX	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1808 aa)
	ifih1	Interferon induced with helicase C domain 1. (1022 aa)
	CLPB	ClpB homolog, mitochondrial AAA ATPase chaperonin. (662 aa)
	LOC103031607	LSM14A mRNA processing body assembly factor a. (465 aa)
	W5KZH6_ASTMX	Uncharacterized protein. (1591 aa)
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (506 aa)
	ddx58	Uncharacterized protein. (943 aa)
	Adar	Adenosine deaminase RNA specific. (1368 aa)
	LOC103032028	Interferon regulatory factor 3. (455 aa)
	Bax	BCL2 associated X, apoptosis regulator a. (190 aa)
	ENSAMXP00000054408	Si:dkey-206d17.12. (289 aa)
	phb	Prohibitin. (271 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (401 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (496 aa)
	ENSAMXP00000046391	Uncharacterized protein. (349 aa)
	dhx58	DEXH (Asp-Glu-X-His) box polypeptide 58. (687 aa)
	sting1	Transmembrane protein 173. (390 aa)
	LOC103037040	Gasdermin domain-containing protein. (473 aa)
	pou2af1	Uncharacterized protein. (264 aa)
	LOC103044943	Chemokine (C-C motif) ligand 19a, tandem duplicate 2. (126 aa)
	LOC103030977	Zinc finger CCCH-type containing 12A. (608 aa)
	LOC103024607	Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adar	ddx58	ENSAMXP00000016960	ENSAMXP00000016457	Adenosine deaminase RNA specific.	Uncharacterized protein.	0.475
Adar	dhx58	ENSAMXP00000016960	ENSAMXP00000042610	Adenosine deaminase RNA specific.	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.429
Adar	ifih1	ENSAMXP00000016960	ENSAMXP00000010301	Adenosine deaminase RNA specific.	Interferon induced with helicase C domain 1.	0.596
Bax	LOC103032028	ENSAMXP00000005311	ENSAMXP00000021858	BCL2 associated X, apoptosis regulator a.	Interferon regulatory factor 3.	0.543
CLPB	phb	ENSAMXP00000035304	ENSAMXP00000054176	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Prohibitin.	0.458
LOC103024607	tgfb1	ENSAMXP00000010023	ENSAMXP00000002667	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
LOC103032028	Bax	ENSAMXP00000021858	ENSAMXP00000005311	Interferon regulatory factor 3.	BCL2 associated X, apoptosis regulator a.	0.543
LOC103032028	ddx58	ENSAMXP00000021858	ENSAMXP00000016457	Interferon regulatory factor 3.	Uncharacterized protein.	0.761
LOC103032028	dhx58	ENSAMXP00000021858	ENSAMXP00000042610	Interferon regulatory factor 3.	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.683
LOC103032028	ifih1	ENSAMXP00000021858	ENSAMXP00000010301	Interferon regulatory factor 3.	Interferon induced with helicase C domain 1.	0.706
LOC103032028	sting1	ENSAMXP00000021858	ENSAMXP00000041107	Interferon regulatory factor 3.	Transmembrane protein 173.	0.975
W5KZH6_ASTMX	ddx58	ENSAMXP00000012988	ENSAMXP00000016457	Uncharacterized protein.	Uncharacterized protein.	0.580
W5KZH6_ASTMX	dhx58	ENSAMXP00000012988	ENSAMXP00000042610	Uncharacterized protein.	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.442
W5KZH6_ASTMX	ifih1	ENSAMXP00000012988	ENSAMXP00000010301	Uncharacterized protein.	Interferon induced with helicase C domain 1.	0.442
ddx58	Adar	ENSAMXP00000016457	ENSAMXP00000016960	Uncharacterized protein.	Adenosine deaminase RNA specific.	0.475
ddx58	LOC103032028	ENSAMXP00000016457	ENSAMXP00000021858	Uncharacterized protein.	Interferon regulatory factor 3.	0.761
ddx58	W5KZH6_ASTMX	ENSAMXP00000016457	ENSAMXP00000012988	Uncharacterized protein.	Uncharacterized protein.	0.580
ddx58	dhx58	ENSAMXP00000016457	ENSAMXP00000042610	Uncharacterized protein.	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.990
ddx58	ifih1	ENSAMXP00000016457	ENSAMXP00000010301	Uncharacterized protein.	Interferon induced with helicase C domain 1.	0.883
ddx58	sting1	ENSAMXP00000016457	ENSAMXP00000041107	Uncharacterized protein.	Transmembrane protein 173.	0.640