29 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mdm1	Mdm1 nuclear protein. (663 aa)
	LOC103042343	Smith-Magenis syndrome chromosome region, candidate 8b. (993 aa)
	LOC103036398	Si:dkeyp-75h12.2. (711 aa)
	LOC103026885	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (796 aa)
	Cep97	Centrosomal protein 97. (568 aa)
	tmem39a	Transmembrane protein 39A. (483 aa)
	W5LD66_ASTMX	Mothers against decapentaplegic homolog. (573 aa)
	Lrrk2	Leucine-rich repeat kinase 2. (2537 aa)
	LOC103022359	Mothers against decapentaplegic homolog. (587 aa)
	LOC103029394	Mothers against decapentaplegic homolog. (544 aa)
	W5LMB0_ASTMX	Si:dkey-288i20.2. (396 aa)
	tmem39b	Transmembrane protein 39B. (492 aa)
	W5LRK4_ASTMX	Nuclear protein 1a. (76 aa)
	ENSAMXP00000028415	Si:ch211-57i17.1. (453 aa)
	ENSAMXP00000028486	Mothers against decapentaplegic homolog. (493 aa)
	LOC103030202	Uncharacterized protein. (733 aa)
	LOC103035587	Microtubule-associated protein. (914 aa)
	fez1	Fasciculation and elongation protein zeta 1 (zygin I). (413 aa)
	LOC103034726	Microtubule-associated protein. (1393 aa)
	ENSAMXP00000037701	RING-type domain-containing protein. (132 aa)
	ENSAMXP00000038669	Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family. (568 aa)
	pink1	PTEN induced kinase 1. (571 aa)
	tbc1d30	TBC1 domain family, member 30. (855 aa)
	ENSAMXP00000044711	Uncharacterized protein. (126 aa)
	styxl1	Serine/threonine/tyrosine interacting-like 1. (293 aa)
	ENSAMXP00000049079	RNA binding motif protein 4.3. (240 aa)
	phf23	PHD finger protein 23b. (319 aa)
	tesk2	Testis associated actin remodelling kinase 2. (691 aa)
	ENSAMXP00000053345	MH1 domain-containing protein. (187 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cep97	LOC103030202	ENSAMXP00000016335	ENSAMXP00000029427	Centrosomal protein 97.	Uncharacterized protein.	0.917
ENSAMXP00000044711	LOC103030202	ENSAMXP00000044711	ENSAMXP00000029427	Uncharacterized protein.	Uncharacterized protein.	0.917
LOC103022359	LOC103029394	ENSAMXP00000018891	ENSAMXP00000019787	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103022359	W5LD66_ASTMX	ENSAMXP00000018891	ENSAMXP00000017778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103026885	phf23	ENSAMXP00000015457	ENSAMXP00000050275	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	PHD finger protein 23b.	0.402
LOC103029394	LOC103022359	ENSAMXP00000019787	ENSAMXP00000018891	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103029394	W5LD66_ASTMX	ENSAMXP00000019787	ENSAMXP00000017778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103030202	Cep97	ENSAMXP00000029427	ENSAMXP00000016335	Uncharacterized protein.	Centrosomal protein 97.	0.917
LOC103030202	ENSAMXP00000044711	ENSAMXP00000029427	ENSAMXP00000044711	Uncharacterized protein.	Uncharacterized protein.	0.917
Lrrk2	pink1	ENSAMXP00000018257	ENSAMXP00000041252	Leucine-rich repeat kinase 2.	PTEN induced kinase 1.	0.557
W5LD66_ASTMX	LOC103022359	ENSAMXP00000017778	ENSAMXP00000018891	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
W5LD66_ASTMX	LOC103029394	ENSAMXP00000017778	ENSAMXP00000019787	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
phf23	LOC103026885	ENSAMXP00000050275	ENSAMXP00000015457	PHD finger protein 23b.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.402
pink1	Lrrk2	ENSAMXP00000041252	ENSAMXP00000018257	PTEN induced kinase 1.	Leucine-rich repeat kinase 2.	0.557