30 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5K0L4_ASTMX	MADS-box domain-containing protein. (479 aa)
	klf5	Kruppel-like factor 5b. (352 aa)
	LOC103037777	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (528 aa)
	LOC103041009	Tumor necrosis factor b (TNF superfamily, member 2). (247 aa)
	W5LD66_ASTMX	Mothers against decapentaplegic homolog. (573 aa)
	W5LEJ6_ASTMX	Myocardin related transcription factor Bb. (812 aa)
	LOC103022359	Mothers against decapentaplegic homolog. (587 aa)
	LOC103029394	Mothers against decapentaplegic homolog. (544 aa)
	LOC103044305	Progesterone immunomodulatory binding factor 1. (443 aa)
	LOC103021920	JunE proto-oncogene, AP-1 transcription factor subunit. (353 aa)
	ENSAMXP00000028486	Mothers against decapentaplegic homolog. (493 aa)
	SRF	Serum response factor. (527 aa)
	ENSAMXP00000030591	WT1 transcription factor b. (391 aa)
	LOC103033710	Kruppel-like factor 5 like. (427 aa)
	LOC103037830	GATA binding protein 2a. (469 aa)
	LOC103032641	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (526 aa)
	Mkl1	Phosphatase and actin regulator. (142 aa)
	ENSAMXP00000037899	MADS-box domain-containing protein. (356 aa)
	MYOCD	Myocardin. (999 aa)
	srebf1	BHLH domain-containing protein. (1160 aa)
	ENSAMXP00000045776	Nerve growth factor receptor a (TNFR superfamily, member 16). (419 aa)
	ENSAMXP00000046311	Si:dkey-23i12.7. (155 aa)
	wt1	WT1 transcription factor a. (415 aa)
	il10	Interleukin 10. (182 aa)
	LOC103042476	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	LOC103047336	Myocardin related transcription factor Ab. (1195 aa)
	fosl1	FOS-like antigen 1a. (356 aa)
	ENSAMXP00000052999	SAP domain-containing protein. (66 aa)
	ENSAMXP00000053345	MH1 domain-containing protein. (187 aa)
	ENSAMXP00000054028	Uncharacterized protein. (193 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000028486	LOC103021920	ENSAMXP00000028486	ENSAMXP00000026691	Mothers against decapentaplegic homolog.	JunE proto-oncogene, AP-1 transcription factor subunit.	0.454
ENSAMXP00000028486	LOC103042476	ENSAMXP00000028486	ENSAMXP00000051642	Mothers against decapentaplegic homolog.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.427
ENSAMXP00000037899	ENSAMXP00000052999	ENSAMXP00000037899	ENSAMXP00000052999	MADS-box domain-containing protein.	SAP domain-containing protein.	0.686
ENSAMXP00000037899	ENSAMXP00000054028	ENSAMXP00000037899	ENSAMXP00000054028	MADS-box domain-containing protein.	Uncharacterized protein.	0.865
ENSAMXP00000037899	LOC103047336	ENSAMXP00000037899	ENSAMXP00000051715	MADS-box domain-containing protein.	Myocardin related transcription factor Ab.	0.686
ENSAMXP00000037899	MYOCD	ENSAMXP00000037899	ENSAMXP00000038289	MADS-box domain-containing protein.	Myocardin.	0.830
ENSAMXP00000037899	Mkl1	ENSAMXP00000037899	ENSAMXP00000037250	MADS-box domain-containing protein.	Phosphatase and actin regulator.	0.686
ENSAMXP00000037899	W5LEJ6_ASTMX	ENSAMXP00000037899	ENSAMXP00000018258	MADS-box domain-containing protein.	Myocardin related transcription factor Bb.	0.686
ENSAMXP00000045776	LOC103032641	ENSAMXP00000045776	ENSAMXP00000035083	Nerve growth factor receptor a (TNFR superfamily, member 16).	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family.	0.693
ENSAMXP00000045776	LOC103037777	ENSAMXP00000045776	ENSAMXP00000004681	Nerve growth factor receptor a (TNFR superfamily, member 16).	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family.	0.693
ENSAMXP00000046311	LOC103021920	ENSAMXP00000046311	ENSAMXP00000026691	Si:dkey-23i12.7.	JunE proto-oncogene, AP-1 transcription factor subunit.	0.864
ENSAMXP00000052999	ENSAMXP00000037899	ENSAMXP00000052999	ENSAMXP00000037899	SAP domain-containing protein.	MADS-box domain-containing protein.	0.686
ENSAMXP00000052999	SRF	ENSAMXP00000052999	ENSAMXP00000028964	SAP domain-containing protein.	Serum response factor.	0.686
ENSAMXP00000052999	W5K0L4_ASTMX	ENSAMXP00000052999	ENSAMXP00000001124	SAP domain-containing protein.	MADS-box domain-containing protein.	0.686
ENSAMXP00000053345	LOC103021920	ENSAMXP00000053345	ENSAMXP00000026691	MH1 domain-containing protein.	JunE proto-oncogene, AP-1 transcription factor subunit.	0.454
ENSAMXP00000053345	LOC103042476	ENSAMXP00000053345	ENSAMXP00000051642	MH1 domain-containing protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.427
ENSAMXP00000054028	ENSAMXP00000037899	ENSAMXP00000054028	ENSAMXP00000037899	Uncharacterized protein.	MADS-box domain-containing protein.	0.865
ENSAMXP00000054028	MYOCD	ENSAMXP00000054028	ENSAMXP00000038289	Uncharacterized protein.	Myocardin.	0.461
ENSAMXP00000054028	SRF	ENSAMXP00000054028	ENSAMXP00000028964	Uncharacterized protein.	Serum response factor.	0.865
ENSAMXP00000054028	W5K0L4_ASTMX	ENSAMXP00000054028	ENSAMXP00000001124	Uncharacterized protein.	MADS-box domain-containing protein.	0.865