34 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103032591	E3 ubiquitin-protein ligase. (853 aa)
	LOC103030977	Zinc finger CCCH-type containing 12A. (608 aa)
	loxl3	Lysyl oxidase-like 3a. (733 aa)
	LOC103040345	Ring finger and CCCH-type domains 2. (1061 aa)
	card11	Caspase recruitment domain family, member 11. (1126 aa)
	Tbx21	T-box transcription factor 21. (577 aa)
	sh3rf1	SH3 domain containing ring finger 1. (884 aa)
	hlx	H2.0-like homeo box 1 (Drosophila). (374 aa)
	malt1	MALT paracaspase 1. (803 aa)
	W5LC84_ASTMX	MALT paracaspase 3. (577 aa)
	LOC103040508	MALT paracaspase 2. (794 aa)
	W5LGZ8_ASTMX	NACHT domain-containing protein. (945 aa)
	LOC103035115	Ring finger and CCCH-type domains 1b. (1124 aa)
	tgfbr2	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (595 aa)
	cbfb	Core-binding factor subunit beta. (187 aa)
	W5LQC1_ASTMX	NACHT domain-containing protein. (919 aa)
	socs1	Suppressor of cytokine signaling 1a. (194 aa)
	LOC103047365	Galectin. (359 aa)
	LOC103022206	E3 ubiquitin-protein ligase. (874 aa)
	sash3	SAM and SH3 domain containing 3. (383 aa)
	ENSAMXP00000033608	Galectin. (306 aa)
	LOC111194477	DNA helicase; Belongs to the MCM family. (827 aa)
	ENSAMXP00000037604	Ig-like domain-containing protein. (189 aa)
	ENSAMXP00000038755	FISNA domain-containing protein. (834 aa)
	rc3h1	Ring finger and CCCH-type domains 1a. (1106 aa)
	nfkbiz	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta. (557 aa)
	LOC103042559	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (543 aa)
	ENSAMXP00000044183	CD83 molecule. (150 aa)
	ENSAMXP00000044910	ANK_REP_REGION domain-containing protein. (265 aa)
	myb	V-myb avian myeloblastosis viral oncogene homolog. (667 aa)
	vsir	V-set immunoregulatory receptor. (283 aa)
	RIPK2	Receptor interacting serine/threonine kinase 2. (579 aa)
	ENSAMXP00000054408	Si:dkey-206d17.12. (289 aa)
	LOC103043058	Lysyl oxidase-like 3b. (796 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000054408	nfkbiz	ENSAMXP00000054408	ENSAMXP00000042804	Si:dkey-206d17.12.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta.	0.447
LOC103022206	LOC103032591	ENSAMXP00000030199	ENSAMXP00000000937	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
LOC103022206	RIPK2	ENSAMXP00000030199	ENSAMXP00000053355	E3 ubiquitin-protein ligase.	Receptor interacting serine/threonine kinase 2.	0.579
LOC103030977	nfkbiz	ENSAMXP00000001771	ENSAMXP00000042804	Zinc finger CCCH-type containing 12A.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta.	0.447
LOC103032591	LOC103022206	ENSAMXP00000000937	ENSAMXP00000030199	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
LOC103032591	RIPK2	ENSAMXP00000000937	ENSAMXP00000053355	E3 ubiquitin-protein ligase.	Receptor interacting serine/threonine kinase 2.	0.579
LOC103035115	LOC103040345	ENSAMXP00000019814	ENSAMXP00000006962	Ring finger and CCCH-type domains 1b.	Ring finger and CCCH-type domains 2.	0.578
LOC103040345	LOC103035115	ENSAMXP00000006962	ENSAMXP00000019814	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.578
LOC103040345	rc3h1	ENSAMXP00000006962	ENSAMXP00000039649	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1a.	0.580
LOC103040508	W5LC84_ASTMX	ENSAMXP00000018694	ENSAMXP00000017446	MALT paracaspase 2.	MALT paracaspase 3.	0.906
LOC103040508	card11	ENSAMXP00000018694	ENSAMXP00000010096	MALT paracaspase 2.	Caspase recruitment domain family, member 11.	0.886
LOC103040508	malt1	ENSAMXP00000018694	ENSAMXP00000016513	MALT paracaspase 2.	MALT paracaspase 1.	0.903
LOC103042559	tgfbr2	ENSAMXP00000043824	ENSAMXP00000021003	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.902
RIPK2	LOC103022206	ENSAMXP00000053355	ENSAMXP00000030199	Receptor interacting serine/threonine kinase 2.	E3 ubiquitin-protein ligase.	0.579
RIPK2	LOC103032591	ENSAMXP00000053355	ENSAMXP00000000937	Receptor interacting serine/threonine kinase 2.	E3 ubiquitin-protein ligase.	0.579
RIPK2	card11	ENSAMXP00000053355	ENSAMXP00000010096	Receptor interacting serine/threonine kinase 2.	Caspase recruitment domain family, member 11.	0.593
Tbx21	hlx	ENSAMXP00000010803	ENSAMXP00000013823	T-box transcription factor 21.	H2.0-like homeo box 1 (Drosophila).	0.580
W5LC84_ASTMX	LOC103040508	ENSAMXP00000017446	ENSAMXP00000018694	MALT paracaspase 3.	MALT paracaspase 2.	0.906
W5LC84_ASTMX	card11	ENSAMXP00000017446	ENSAMXP00000010096	MALT paracaspase 3.	Caspase recruitment domain family, member 11.	0.886
W5LC84_ASTMX	malt1	ENSAMXP00000017446	ENSAMXP00000016513	MALT paracaspase 3.	MALT paracaspase 1.	0.902