STRINGSTRING
atxn1l atxn1l sirt6 sirt6 tgfb1 tgfb1 pdcd2 pdcd2 W5KN49_ASTMX W5KN49_ASTMX LOC103024607 LOC103024607 LOC111193684 LOC111193684 fgf4 fgf4 ENSAMXP00000031911 ENSAMXP00000031911 PTPRC PTPRC Vegfc Vegfc ENSAMXP00000053702 ENSAMXP00000053702 kdm1a kdm1a LOC103043941 LOC103043941 ENSAMXP00000042552 ENSAMXP00000042552
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atxn1lAtaxin 1-like. (870 aa)
sirt6Sirtuin 6. (396 aa)
tgfb1Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
pdcd2Programmed cell death 2. (356 aa)
W5KN49_ASTMXUncharacterized protein; Belongs to the heparin-binding growth factors family. (67 aa)
LOC103024607Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
LOC111193684Si:ch211-161c3.6. (114 aa)
fgf4Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (191 aa)
ENSAMXP00000031911Uncharacterized protein. (212 aa)
PTPRCProtein tyrosine phosphatase receptor type C. (809 aa)
VegfcVascular endothelial growth factor c; Belongs to the PDGF/VEGF growth factor family. (339 aa)
ENSAMXP00000053702Uncharacterized protein. (283 aa)
kdm1aLysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (849 aa)
LOC103043941H6 family homeobox 2. (276 aa)
ENSAMXP00000042552Uncharacterized protein. (809 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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