4 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC111191807	Guanine nucleotide binding protein (G protein), alpha 14. (353 aa)
	LOC103045202	Guanine nucleotide binding protein (G protein), alpha 14a. (354 aa)
	LOC103033252	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class). (402 aa)
	LOC103042808	Uncharacterized protein. (359 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103033252	LOC111191807	ENSAMXP00000012409	ENSAMXP00000034958	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14.	0.516
LOC103042808	LOC103045202	ENSAMXP00000051395	ENSAMXP00000001077	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.901
LOC103042808	LOC111191807	ENSAMXP00000051395	ENSAMXP00000034958	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14.	0.949
LOC103045202	LOC103042808	ENSAMXP00000001077	ENSAMXP00000051395	Guanine nucleotide binding protein (G protein), alpha 14a.	Uncharacterized protein.	0.901
LOC103045202	LOC111191807	ENSAMXP00000001077	ENSAMXP00000034958	Guanine nucleotide binding protein (G protein), alpha 14a.	Guanine nucleotide binding protein (G protein), alpha 14.	0.949
LOC111191807	LOC103033252	ENSAMXP00000034958	ENSAMXP00000012409	Guanine nucleotide binding protein (G protein), alpha 14.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.516
LOC111191807	LOC103042808	ENSAMXP00000034958	ENSAMXP00000051395	Guanine nucleotide binding protein (G protein), alpha 14.	Uncharacterized protein.	0.949
LOC111191807	LOC103045202	ENSAMXP00000034958	ENSAMXP00000001077	Guanine nucleotide binding protein (G protein), alpha 14.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.949