STRINGSTRING
parn parn YTHDC2 YTHDC2 nfx1 nfx1 R3HDM1 R3HDM1 ighmbp2 ighmbp2 Nkrf Nkrf W5LD01_ASTMX W5LD01_ASTMX arpp21 arpp21 ENSAMXP00000051503 ENSAMXP00000051503 Spag7 Spag7 r3hdm4 r3hdm4 r3hdm1 r3hdm1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
parnPoly(A)-specific ribonuclease (deadenylation nuclease). (643 aa)
YTHDC2YTH domain containing 2. (1418 aa)
nfx1Nuclear transcription factor, X-box binding 1. (1116 aa)
R3HDM1R3H domain containing 1. (1126 aa)
ighmbp2Immunoglobulin mu DNA binding protein 2. (1012 aa)
NkrfNFKB repressing factor. (850 aa)
W5LD01_ASTMXR3H domain containing 2. (889 aa)
arpp21cAMP-regulated phosphoprotein, 21. (689 aa)
ENSAMXP00000051503R3H domain-containing protein. (201 aa)
Spag7Sperm-associated antigen 7 homolog. (255 aa)
r3hdm4R3H domain containing 4. (255 aa)
r3hdm1R3H domain containing 1. (1140 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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