(20 nodes) Troponin network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAMXP00000043943	Troponin T3, fast skeletal type. (329 aa)
	W5K1M7_ASTMX	Troponin T2d, cardiac. (216 aa)
	W5K8T0_ASTMX	Troponin I, skeletal, slow c. (215 aa)
	W5KTK3_ASTMX	Troponin T type 1 (skeletal, slow). (177 aa)
	W5LCR2_ASTMX	Troponin I2, fast skeletal type. (170 aa)
	W5LCS6_ASTMX	Troponin I type 2a (skeletal, fast), tandem duplicate 4. (172 aa)
	W5LNH4_ASTMX	Troponin T2e, cardiac. (279 aa)
	LOC103022042	Troponin I type 2b (skeletal, fast), tandem duplicate 1. (176 aa)
	W5LTI5_ASTMX	Troponin T2c, cardiac. (237 aa)
	ENSAMXP00000027835	Uncharacterized protein. (226 aa)
	ENSAMXP00000028251	Troponin T type 2b (cardiac). (205 aa)
	LOC103034366	Troponin I type 2a (skeletal, fast), tandem duplicate 4. (176 aa)
	ENSAMXP00000032309	Troponin I, skeletal, slow d. (186 aa)
	LOC103035007	Troponin I type 2a (skeletal, fast), tandem duplicate 1. (193 aa)
	ENSAMXP00000039450	Uncharacterized protein. (120 aa)
	W5K1H4_ASTMX	Troponin I4b, tandem duplicate 1. (178 aa)
	ENSAMXP00000043331	Troponin I4a. (205 aa)
	Tnni1	Troponin I type 1b (skeletal, slow). (170 aa)
	ENSAMXP00000046341	Troponin T type 3a (skeletal, fast). (329 aa)
	ENSAMXP00000051590	Uncharacterized protein. (180 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000027835	ENSAMXP00000028251	ENSAMXP00000027835	ENSAMXP00000028251	Uncharacterized protein.	Troponin T type 2b (cardiac).	0.448
ENSAMXP00000027835	ENSAMXP00000032309	ENSAMXP00000027835	ENSAMXP00000032309	Uncharacterized protein.	Troponin I, skeletal, slow d.	0.780
ENSAMXP00000027835	ENSAMXP00000039450	ENSAMXP00000027835	ENSAMXP00000039450	Uncharacterized protein.	Uncharacterized protein.	0.822
ENSAMXP00000027835	ENSAMXP00000043331	ENSAMXP00000027835	ENSAMXP00000043331	Uncharacterized protein.	Troponin I4a.	0.815
ENSAMXP00000027835	ENSAMXP00000043943	ENSAMXP00000027835	ENSAMXP00000043943	Uncharacterized protein.	Troponin T3, fast skeletal type.	0.442
ENSAMXP00000027835	ENSAMXP00000046341	ENSAMXP00000027835	ENSAMXP00000046341	Uncharacterized protein.	Troponin T type 3a (skeletal, fast).	0.445
ENSAMXP00000027835	ENSAMXP00000051590	ENSAMXP00000027835	ENSAMXP00000051590	Uncharacterized protein.	Uncharacterized protein.	0.815
ENSAMXP00000027835	LOC103022042	ENSAMXP00000027835	ENSAMXP00000022221	Uncharacterized protein.	Troponin I type 2b (skeletal, fast), tandem duplicate 1.	0.785
ENSAMXP00000027835	LOC103034366	ENSAMXP00000027835	ENSAMXP00000029090	Uncharacterized protein.	Troponin I type 2a (skeletal, fast), tandem duplicate 4.	0.812
ENSAMXP00000027835	LOC103035007	ENSAMXP00000027835	ENSAMXP00000037624	Uncharacterized protein.	Troponin I type 2a (skeletal, fast), tandem duplicate 1.	0.785
ENSAMXP00000027835	Tnni1	ENSAMXP00000027835	ENSAMXP00000044317	Uncharacterized protein.	Troponin I type 1b (skeletal, slow).	0.916
ENSAMXP00000027835	W5K1H4_ASTMX	ENSAMXP00000027835	ENSAMXP00000042011	Uncharacterized protein.	Troponin I4b, tandem duplicate 1.	0.815
ENSAMXP00000027835	W5K8T0_ASTMX	ENSAMXP00000027835	ENSAMXP00000003991	Uncharacterized protein.	Troponin I, skeletal, slow c.	0.780
ENSAMXP00000027835	W5LCR2_ASTMX	ENSAMXP00000027835	ENSAMXP00000017624	Uncharacterized protein.	Troponin I2, fast skeletal type.	0.785
ENSAMXP00000027835	W5LCS6_ASTMX	ENSAMXP00000027835	ENSAMXP00000017638	Uncharacterized protein.	Troponin I type 2a (skeletal, fast), tandem duplicate 4.	0.812
ENSAMXP00000028251	ENSAMXP00000027835	ENSAMXP00000028251	ENSAMXP00000027835	Troponin T type 2b (cardiac).	Uncharacterized protein.	0.448
ENSAMXP00000028251	ENSAMXP00000032309	ENSAMXP00000028251	ENSAMXP00000032309	Troponin T type 2b (cardiac).	Troponin I, skeletal, slow d.	0.827
ENSAMXP00000028251	ENSAMXP00000039450	ENSAMXP00000028251	ENSAMXP00000039450	Troponin T type 2b (cardiac).	Uncharacterized protein.	0.837
ENSAMXP00000028251	ENSAMXP00000043331	ENSAMXP00000028251	ENSAMXP00000043331	Troponin T type 2b (cardiac).	Troponin I4a.	0.825
ENSAMXP00000028251	ENSAMXP00000043943	ENSAMXP00000028251	ENSAMXP00000043943	Troponin T type 2b (cardiac).	Troponin T3, fast skeletal type.	0.466