23 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103032621	Interferon regulatory factor 4b. (432 aa)
	W5KFJ0_ASTMX	Mothers against decapentaplegic homolog. (468 aa)
	smad5	Mothers against decapentaplegic homolog. (464 aa)
	ENSAMXP00000053668	Interferon regulatory factor 10. (285 aa)
	irf8	Interferon regulatory factor 8. (434 aa)
	smad7	Mothers against decapentaplegic homolog. (390 aa)
	LOC103034326	IRF tryptophan pentad repeat domain-containing protein. (452 aa)
	irf5	Interferon regulatory factor 5. (478 aa)
	irf7	Interferon regulatory factor 7. (424 aa)
	W5LD66_ASTMX	Mothers against decapentaplegic homolog. (573 aa)
	LOC103022359	Mothers against decapentaplegic homolog. (587 aa)
	LOC103029394	Mothers against decapentaplegic homolog. (544 aa)
	LOC103032028	Interferon regulatory factor 3. (455 aa)
	ENSAMXP00000028486	Mothers against decapentaplegic homolog. (493 aa)
	LOC103027004	Mothers against decapentaplegic homolog. (424 aa)
	ENSAMXP00000033639	Mothers against decapentaplegic homolog. (425 aa)
	ENSAMXP00000048688	Interferon regulatory factor 6. (436 aa)
	smad2	Mothers against decapentaplegic homolog. (468 aa)
	smad1	Mothers against decapentaplegic homolog. (488 aa)
	LOC103046745	Interferon regulatory factor 4a. (469 aa)
	LOC103027811	Mothers against decapentaplegic homolog. (425 aa)
	smad6	Mothers against decapentaplegic homolog. (480 aa)
	W5KBS6_ASTMX	Interferon regulatory factor 9. (399 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000028486	ENSAMXP00000033639	ENSAMXP00000028486	ENSAMXP00000033639	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.783
ENSAMXP00000028486	LOC103027004	ENSAMXP00000028486	ENSAMXP00000031297	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.797
ENSAMXP00000028486	LOC103027811	ENSAMXP00000028486	ENSAMXP00000046514	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.797
ENSAMXP00000028486	W5KFJ0_ASTMX	ENSAMXP00000028486	ENSAMXP00000006351	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.449
ENSAMXP00000028486	smad1	ENSAMXP00000028486	ENSAMXP00000040326	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.720
ENSAMXP00000028486	smad2	ENSAMXP00000028486	ENSAMXP00000035422	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.785
ENSAMXP00000028486	smad5	ENSAMXP00000028486	ENSAMXP00000011289	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.781
ENSAMXP00000028486	smad6	ENSAMXP00000028486	ENSAMXP00000002954	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.449
ENSAMXP00000028486	smad7	ENSAMXP00000028486	ENSAMXP00000051620	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.449
ENSAMXP00000033639	ENSAMXP00000028486	ENSAMXP00000033639	ENSAMXP00000028486	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.783
ENSAMXP00000033639	LOC103022359	ENSAMXP00000033639	ENSAMXP00000018891	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.720
ENSAMXP00000033639	LOC103027004	ENSAMXP00000033639	ENSAMXP00000031297	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.532
ENSAMXP00000033639	LOC103027811	ENSAMXP00000033639	ENSAMXP00000046514	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.532
ENSAMXP00000033639	LOC103029394	ENSAMXP00000033639	ENSAMXP00000019787	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.783
ENSAMXP00000033639	W5KFJ0_ASTMX	ENSAMXP00000033639	ENSAMXP00000006351	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.537
ENSAMXP00000033639	W5LD66_ASTMX	ENSAMXP00000033639	ENSAMXP00000017778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.720
ENSAMXP00000033639	smad2	ENSAMXP00000033639	ENSAMXP00000035422	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.531
ENSAMXP00000033639	smad6	ENSAMXP00000033639	ENSAMXP00000002954	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.537
ENSAMXP00000033639	smad7	ENSAMXP00000033639	ENSAMXP00000051620	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.537
ENSAMXP00000053668	LOC103032028	ENSAMXP00000053668	ENSAMXP00000021858	Interferon regulatory factor 10.	Interferon regulatory factor 3.	0.481