(3 nodes) RBP-Jkappa, IPT domain network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbpj	Recombination signal binding protein for immunoglobulin kappa J region b. (494 aa)
	Rbpjl	Recombination signal binding protein for immunoglobulin kappa J region-like. (465 aa)
	LOC103029567	Recombination signal binding protein for immunoglobulin kappa J region a. (502 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103029567	Rbpjl	ENSAMXP00000011492	ENSAMXP00000008299	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.908
LOC103029567	rbpj	ENSAMXP00000011492	ENSAMXP00000011127	Recombination signal binding protein for immunoglobulin kappa J region a.	Recombination signal binding protein for immunoglobulin kappa J region b.	0.900
Rbpjl	LOC103029567	ENSAMXP00000008299	ENSAMXP00000011492	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.908
Rbpjl	rbpj	ENSAMXP00000008299	ENSAMXP00000011127	Recombination signal binding protein for immunoglobulin kappa J region-like.	Recombination signal binding protein for immunoglobulin kappa J region b.	0.908
rbpj	LOC103029567	ENSAMXP00000011127	ENSAMXP00000011492	Recombination signal binding protein for immunoglobulin kappa J region b.	Recombination signal binding protein for immunoglobulin kappa J region a.	0.900
rbpj	Rbpjl	ENSAMXP00000011127	ENSAMXP00000008299	Recombination signal binding protein for immunoglobulin kappa J region b.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.908