STRINGSTRING
tgfb1 tgfb1 LOC103024607 LOC103024607 W5L6U8_ASTMX W5L6U8_ASTMX SDC3 SDC3 vtn vtn fgf2 fgf2 ENSAMXP00000039033 ENSAMXP00000039033 SDC1 SDC1 LOC103040550 LOC103040550 LOC103022760 LOC103022760 sdc4 sdc4 LOC103043894 LOC103043894
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tgfb1Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
LOC103024607Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
W5L6U8_ASTMXProtein kinase C. (646 aa)
SDC3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (421 aa)
vtnVitronectin b. (461 aa)
fgf2Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
ENSAMXP00000039033Fibronectin 1b. (2449 aa)
SDC1Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (370 aa)
LOC103040550Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (212 aa)
LOC103022760Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
sdc4Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (244 aa)
LOC103043894Vitronectin a. (599 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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