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polr2j polr2j LOC103041487 LOC103041487 polr2k polr2k rnpc3 rnpc3 zcrb1 zcrb1 snrpd2 snrpd2 YBX2 YBX2 snrnp25 snrnp25 LOC103041055-2 LOC103041055-2 LOC103030467 LOC103030467 snrpd1 snrpd1 polr2g polr2g polr2i polr2i sf3b6 sf3b6 polr2a polr2a Ncbp2 Ncbp2 snrnp40 snrnp40 txnl4a txnl4a srsf1 srsf1 ENSAMXP00000037494 ENSAMXP00000037494 ddx42 ddx42 snrpb snrpb snrpd3 snrpd3 ENSAMXP00000035178 ENSAMXP00000035178 snrnp48 snrnp48 ENSAMXP00000034843 ENSAMXP00000034843 polr2l polr2l LOC103041055 LOC103041055 snrnp70 snrnp70 LOC103027270 LOC103027270 snrpg snrpg Snrnp35 Snrnp35 LOC103042992 LOC103042992 W5LQW7_ASTMX W5LQW7_ASTMX prpf8 prpf8 POLR2E POLR2E zrsr2 zrsr2 ddx23 ddx23 NCBP1 NCBP1 ybx1 ybx1 POLR2F POLR2F polr2c polr2c W5KU27_ASTMX W5KU27_ASTMX polr2d polr2d sf3b4 sf3b4 sf3b2 sf3b2 Snrpf Snrpf srsf7 srsf7 zmat5 zmat5 snrnp200 snrnp200 POLR2B POLR2B sf3b3 sf3b3 Pdcd7 Pdcd7 sf3b1 sf3b1 prpf6 prpf6 polr2h polr2h W5K1U8_ASTMX W5K1U8_ASTMX eftud2 eftud2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
LOC103041487Uncharacterized protein. (243 aa)
polr2kUncharacterized protein. (109 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (508 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
YBX2Y-box binding protein 2. (312 aa)
snrnp25Small nuclear ribonucleoprotein 25. (219 aa)
LOC103041055-2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
LOC103030467General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (255 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (124 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (378 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
srsf1Serine and arginine rich splicing factor 1a. (252 aa)
ENSAMXP00000037494Uncharacterized protein. (448 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (943 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (128 aa)
ENSAMXP00000035178Uncharacterized protein. (379 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (332 aa)
ENSAMXP00000034843Uncharacterized protein. (55 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC103041055Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
snrnp70RRM domain-containing protein. (499 aa)
LOC103027270Serine and arginine rich splicing factor 2a. (211 aa)
snrpgSmall nuclear ribonucleoprotein G. (77 aa)
Snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (209 aa)
LOC103042992General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
W5LQW7_ASTMXSerine and arginine rich splicing factor 1b. (216 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (632 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (813 aa)
NCBP1Nuclear cap binding protein subunit 1. (797 aa)
ybx1Y box binding protein 1. (312 aa)
POLR2FRNA polymerase II subunit F. (127 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
W5KU27_ASTMXTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (541 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (143 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
sf3b2Splicing factor 3b, subunit 2. (886 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
srsf7Serine and arginine rich splicing factor 7b. (240 aa)
zmat5Zinc finger, matrin-type 5. (172 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2135 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1053 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
Pdcd7Programmed cell death 7. (515 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
W5K1U8_ASTMXSerine and arginine rich splicing factor 7a. (243 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (977 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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