5 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108258364	Cytokine receptor common subunit beta-like isoform X2. (726 aa)
	ENSIPUP00000004727	annotation not available (151 aa)
	sash1	SAM and SH3 domain-containing protein 1 isoform X2. (1171 aa)
	LOC108258973	Interleukin-5 receptor subunit alpha-like. (318 aa)
	LOC108277652	SAM domain-containing protein SAMSN-1-like. (393 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108258364	LOC108258973	ENSIPUP00000003044	ENSIPUP00000019248	Cytokine receptor common subunit beta-like isoform X2.	Interleukin-5 receptor subunit alpha-like.	0.951
LOC108258364	LOC108277652	ENSIPUP00000003044	ENSIPUP00000021464	Cytokine receptor common subunit beta-like isoform X2.	SAM domain-containing protein SAMSN-1-like.	0.401
LOC108258973	LOC108258364	ENSIPUP00000019248	ENSIPUP00000003044	Interleukin-5 receptor subunit alpha-like.	Cytokine receptor common subunit beta-like isoform X2.	0.951
LOC108277652	LOC108258364	ENSIPUP00000021464	ENSIPUP00000003044	SAM domain-containing protein SAMSN-1-like.	Cytokine receptor common subunit beta-like isoform X2.	0.401