5 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108266771	Adaptin ear-binding coat-associated protein 1-like isoform X2. (265 aa)
	LOC108264350	AP-2 complex subunit mu-B. (438 aa)
	LOC108269989	Intersectin-2-like isoform X1. (1695 aa)
	ap1b1	AP complex subunit beta. (952 aa)
	itsn1	Intersectin-1 isoform X2. (1526 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108264350	LOC108266771	ENSIPUP00000020061	ENSIPUP00000010994	AP-2 complex subunit mu-B.	Adaptin ear-binding coat-associated protein 1-like isoform X2.	0.891
LOC108264350	LOC108269989	ENSIPUP00000020061	ENSIPUP00000020654	AP-2 complex subunit mu-B.	Intersectin-2-like isoform X1.	0.994
LOC108264350	ap1b1	ENSIPUP00000020061	ENSIPUP00000024202	AP-2 complex subunit mu-B.	AP complex subunit beta.	0.955
LOC108264350	itsn1	ENSIPUP00000020061	ENSIPUP00000029900	AP-2 complex subunit mu-B.	Intersectin-1 isoform X2.	0.988
LOC108266771	LOC108264350	ENSIPUP00000010994	ENSIPUP00000020061	Adaptin ear-binding coat-associated protein 1-like isoform X2.	AP-2 complex subunit mu-B.	0.891
LOC108266771	LOC108269989	ENSIPUP00000010994	ENSIPUP00000020654	Adaptin ear-binding coat-associated protein 1-like isoform X2.	Intersectin-2-like isoform X1.	0.987
LOC108266771	ap1b1	ENSIPUP00000010994	ENSIPUP00000024202	Adaptin ear-binding coat-associated protein 1-like isoform X2.	AP complex subunit beta.	0.795
LOC108266771	itsn1	ENSIPUP00000010994	ENSIPUP00000029900	Adaptin ear-binding coat-associated protein 1-like isoform X2.	Intersectin-1 isoform X2.	0.981
LOC108269989	LOC108264350	ENSIPUP00000020654	ENSIPUP00000020061	Intersectin-2-like isoform X1.	AP-2 complex subunit mu-B.	0.994
LOC108269989	LOC108266771	ENSIPUP00000020654	ENSIPUP00000010994	Intersectin-2-like isoform X1.	Adaptin ear-binding coat-associated protein 1-like isoform X2.	0.987
LOC108269989	ap1b1	ENSIPUP00000020654	ENSIPUP00000024202	Intersectin-2-like isoform X1.	AP complex subunit beta.	0.998
LOC108269989	itsn1	ENSIPUP00000020654	ENSIPUP00000029900	Intersectin-2-like isoform X1.	Intersectin-1 isoform X2.	0.948
ap1b1	LOC108264350	ENSIPUP00000024202	ENSIPUP00000020061	AP complex subunit beta.	AP-2 complex subunit mu-B.	0.955
ap1b1	LOC108266771	ENSIPUP00000024202	ENSIPUP00000010994	AP complex subunit beta.	Adaptin ear-binding coat-associated protein 1-like isoform X2.	0.795
ap1b1	LOC108269989	ENSIPUP00000024202	ENSIPUP00000020654	AP complex subunit beta.	Intersectin-2-like isoform X1.	0.998
ap1b1	itsn1	ENSIPUP00000024202	ENSIPUP00000029900	AP complex subunit beta.	Intersectin-1 isoform X2.	0.953
itsn1	LOC108264350	ENSIPUP00000029900	ENSIPUP00000020061	Intersectin-1 isoform X2.	AP-2 complex subunit mu-B.	0.988
itsn1	LOC108266771	ENSIPUP00000029900	ENSIPUP00000010994	Intersectin-1 isoform X2.	Adaptin ear-binding coat-associated protein 1-like isoform X2.	0.981
itsn1	LOC108269989	ENSIPUP00000029900	ENSIPUP00000020654	Intersectin-1 isoform X2.	Intersectin-2-like isoform X1.	0.948
itsn1	ap1b1	ENSIPUP00000029900	ENSIPUP00000024202	Intersectin-1 isoform X2.	AP complex subunit beta.	0.953