5 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubr1	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1744 aa)
	LOC108269665	Photoreceptor outer segment membrane glycoprotein 2-like. (363 aa)
	tmem179	Transmembrane protein 179. (233 aa)
	npas3	Neuronal PAS domain-containing protein 3 isoform X1. (973 aa)
	LOC108258119	Photoreceptor outer segment membrane glycoprotein 2-like. (355 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108258119	npas3	ENSIPUP00000027614	ENSIPUP00000001470	Photoreceptor outer segment membrane glycoprotein 2-like.	Neuronal PAS domain-containing protein 3 isoform X1.	0.607
LOC108258119	tmem179	ENSIPUP00000027614	ENSIPUP00000000929	Photoreceptor outer segment membrane glycoprotein 2-like.	Transmembrane protein 179.	0.600
LOC108258119	ubr1	ENSIPUP00000027614	ENSIPUP00000000843	Photoreceptor outer segment membrane glycoprotein 2-like.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.631
LOC108269665	npas3	ENSIPUP00000000917	ENSIPUP00000001470	Photoreceptor outer segment membrane glycoprotein 2-like.	Neuronal PAS domain-containing protein 3 isoform X1.	0.607
LOC108269665	tmem179	ENSIPUP00000000917	ENSIPUP00000000929	Photoreceptor outer segment membrane glycoprotein 2-like.	Transmembrane protein 179.	0.600
LOC108269665	ubr1	ENSIPUP00000000917	ENSIPUP00000000843	Photoreceptor outer segment membrane glycoprotein 2-like.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.631
npas3	LOC108258119	ENSIPUP00000001470	ENSIPUP00000027614	Neuronal PAS domain-containing protein 3 isoform X1.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.607
npas3	LOC108269665	ENSIPUP00000001470	ENSIPUP00000000917	Neuronal PAS domain-containing protein 3 isoform X1.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.607
npas3	tmem179	ENSIPUP00000001470	ENSIPUP00000000929	Neuronal PAS domain-containing protein 3 isoform X1.	Transmembrane protein 179.	0.599
npas3	ubr1	ENSIPUP00000001470	ENSIPUP00000000843	Neuronal PAS domain-containing protein 3 isoform X1.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.596
tmem179	LOC108258119	ENSIPUP00000000929	ENSIPUP00000027614	Transmembrane protein 179.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.600
tmem179	LOC108269665	ENSIPUP00000000929	ENSIPUP00000000917	Transmembrane protein 179.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.600
tmem179	npas3	ENSIPUP00000000929	ENSIPUP00000001470	Transmembrane protein 179.	Neuronal PAS domain-containing protein 3 isoform X1.	0.599
tmem179	ubr1	ENSIPUP00000000929	ENSIPUP00000000843	Transmembrane protein 179.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.601
ubr1	LOC108258119	ENSIPUP00000000843	ENSIPUP00000027614	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.631
ubr1	LOC108269665	ENSIPUP00000000843	ENSIPUP00000000917	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Photoreceptor outer segment membrane glycoprotein 2-like.	0.631
ubr1	npas3	ENSIPUP00000000843	ENSIPUP00000001470	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Neuronal PAS domain-containing protein 3 isoform X1.	0.596
ubr1	tmem179	ENSIPUP00000000843	ENSIPUP00000000929	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Transmembrane protein 179.	0.601