STRINGSTRING
R3HDM1 R3HDM1 rnf130 rnf130 LOC108268929 LOC108268929 trim59 trim59 LOC108259264 LOC108259264 LOC108271944 LOC108271944 rnft1 rnft1 rnft2 rnft2 RNF223 RNF223 LOC108256380 LOC108256380 LOC108255597 LOC108255597 ENSIPUP00000034832 ENSIPUP00000034832 rnf144a rnf144a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
R3HDM1R3H domain-containing protein 1 isoform X6. (959 aa)
rnf130E3 ubiquitin-protein ligase RNF130. (367 aa)
LOC108268929E3 ubiquitin-protein ligase RNF130-like. (148 aa)
trim59Tripartite motif-containing protein 59. (422 aa)
LOC108259264R3H domain-containing protein 1-like isoform X5. (1043 aa)
LOC108271944RING finger protein 223-like. (235 aa)
rnft1RING finger and transmembrane domain-containing protein 1. (412 aa)
rnft2RING finger and transmembrane domain-containing protein 2. (443 aa)
RNF223RING finger protein 223. (218 aa)
LOC108256380RBR-type E3 ubiquitin transferase. (303 aa)
LOC108255597RING finger protein 183-like. (203 aa)
ENSIPUP00000034832annotation not available (250 aa)
rnf144aRBR-type E3 ubiquitin transferase. (293 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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