12 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108278540	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (107 aa)
	LOC108278539	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (153 aa)
	map3k4	Mitogen-activated protein kinase kinase kinase 4 isoform X2. (1528 aa)
	gadd45b	Growth arrest and DNA damage-inducible protein GADD45 beta. (238 aa)
	ENSIPUP00000013355	annotation not available (265 aa)
	LOC108272203	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (210 aa)
	csrnp1	Cysteine/serine-rich nuclear protein 1. (718 aa)
	LOC108267448	Growth arrest and DNA damage-inducible protein GADD45 beta-like. (158 aa)
	ENSIPUP00000024252	annotation not available (77 aa)
	kcnj13	Inward rectifier potassium channel 13 isoform X1. (403 aa)
	LOC108264936	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (161 aa)
	LOC108277015	Smoothelin-like. (180 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000013355	kcnj13	ENSIPUP00000013355	ENSIPUP00000028329	annotation not available	Inward rectifier potassium channel 13 isoform X1.	0.454
LOC108264936	map3k4	ENSIPUP00000032015	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.968
LOC108267448	csrnp1	ENSIPUP00000020877	ENSIPUP00000018279	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	Cysteine/serine-rich nuclear protein 1.	0.668
LOC108267448	map3k4	ENSIPUP00000020877	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.836
LOC108272203	map3k4	ENSIPUP00000017308	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.962
LOC108278539	map3k4	ENSIPUP00000006912	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.953
LOC108278540	map3k4	ENSIPUP00000006898	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.953
csrnp1	LOC108267448	ENSIPUP00000018279	ENSIPUP00000020877	Cysteine/serine-rich nuclear protein 1.	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	0.668
gadd45b	map3k4	ENSIPUP00000011221	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 beta.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.946
kcnj13	ENSIPUP00000013355	ENSIPUP00000028329	ENSIPUP00000013355	Inward rectifier potassium channel 13 isoform X1.	annotation not available	0.454
map3k4	LOC108264936	ENSIPUP00000007937	ENSIPUP00000032015	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.968
map3k4	LOC108267448	ENSIPUP00000007937	ENSIPUP00000020877	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	0.836
map3k4	LOC108272203	ENSIPUP00000007937	ENSIPUP00000017308	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	0.962
map3k4	LOC108278539	ENSIPUP00000007937	ENSIPUP00000006912	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.953
map3k4	LOC108278540	ENSIPUP00000007937	ENSIPUP00000006898	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.953
map3k4	gadd45b	ENSIPUP00000007937	ENSIPUP00000011221	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 beta.	0.946