14 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	skp2	S-phase kinase-associated protein 2. (411 aa)
	LOC108255117	F-box only protein 2-like. (176 aa)
	cul1	Cullin 1. (861 aa)
	LOC108261246	Cullin-3. (670 aa)
	LOC108275024	F-box/WD repeat-containing protein 11-like isoform X1. (567 aa)
	LOC108280768	Cullin-1; Belongs to the cullin family. (777 aa)
	fbxw7	F-box/WD repeat-containing protein 7. (752 aa)
	kdm2a	Lysine-specific demethylase 2A isoform X1. (1276 aa)
	fbxo9	F-box only protein 9 isoform X1. (423 aa)
	cand1	Cullin-associated NEDD8-dissociated protein 1. (1230 aa)
	LOC108277126	F-box/WD repeat-containing protein 11 isoform X1. (525 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (201 aa)
	LOC108279000	E3 ubiquitin-protein ligase RBX1-like. (108 aa)
	rbx1	E3 ubiquitin-protein ligase RBX1. (108 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255117	LOC108261246	ENSIPUP00000005120	ENSIPUP00000009579	F-box only protein 2-like.	Cullin-3.	0.506
LOC108255117	LOC108275024	ENSIPUP00000005120	ENSIPUP00000012960	F-box only protein 2-like.	F-box/WD repeat-containing protein 11-like isoform X1.	0.913
LOC108255117	LOC108277126	ENSIPUP00000005120	ENSIPUP00000029877	F-box only protein 2-like.	F-box/WD repeat-containing protein 11 isoform X1.	0.913
LOC108255117	LOC108279000	ENSIPUP00000005120	ENSIPUP00000032281	F-box only protein 2-like.	E3 ubiquitin-protein ligase RBX1-like.	0.572
LOC108255117	LOC108280768	ENSIPUP00000005120	ENSIPUP00000013535	F-box only protein 2-like.	Cullin-1; Belongs to the cullin family.	0.733
LOC108255117	cand1	ENSIPUP00000005120	ENSIPUP00000023478	F-box only protein 2-like.	Cullin-associated NEDD8-dissociated protein 1.	0.482
LOC108255117	cul1	ENSIPUP00000005120	ENSIPUP00000007459	F-box only protein 2-like.	Cullin 1.	0.733
LOC108255117	fbxw7	ENSIPUP00000005120	ENSIPUP00000019884	F-box only protein 2-like.	F-box/WD repeat-containing protein 7.	0.919
LOC108255117	rbx1	ENSIPUP00000005120	ENSIPUP00000033830	F-box only protein 2-like.	E3 ubiquitin-protein ligase RBX1.	0.572
LOC108255117	skp1	ENSIPUP00000005120	ENSIPUP00000030698	F-box only protein 2-like.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.918
LOC108255117	skp2	ENSIPUP00000005120	ENSIPUP00000002556	F-box only protein 2-like.	S-phase kinase-associated protein 2.	0.933
LOC108261246	LOC108255117	ENSIPUP00000009579	ENSIPUP00000005120	Cullin-3.	F-box only protein 2-like.	0.506
LOC108261246	LOC108275024	ENSIPUP00000009579	ENSIPUP00000012960	Cullin-3.	F-box/WD repeat-containing protein 11-like isoform X1.	0.832
LOC108261246	LOC108277126	ENSIPUP00000009579	ENSIPUP00000029877	Cullin-3.	F-box/WD repeat-containing protein 11 isoform X1.	0.832
LOC108261246	LOC108279000	ENSIPUP00000009579	ENSIPUP00000032281	Cullin-3.	E3 ubiquitin-protein ligase RBX1-like.	0.883
LOC108261246	LOC108280768	ENSIPUP00000009579	ENSIPUP00000013535	Cullin-3.	Cullin-1; Belongs to the cullin family.	0.511
LOC108261246	cand1	ENSIPUP00000009579	ENSIPUP00000023478	Cullin-3.	Cullin-associated NEDD8-dissociated protein 1.	0.832
LOC108261246	cul1	ENSIPUP00000009579	ENSIPUP00000007459	Cullin-3.	Cullin 1.	0.511
LOC108261246	fbxo9	ENSIPUP00000009579	ENSIPUP00000023166	Cullin-3.	F-box only protein 9 isoform X1.	0.819
LOC108261246	fbxw7	ENSIPUP00000009579	ENSIPUP00000019884	Cullin-3.	F-box/WD repeat-containing protein 7.	0.742