STRINGSTRING
polr3f polr3f LOC108262464 LOC108262464 LOC108277410 LOC108277410 sh21a sh21a socs1 socs1 ythdf3 ythdf3 zmpste24 zmpste24 fadd fadd samhd1 samhd1 wap65-2 wap65-2 LOC108270067 LOC108270067 LOC108269388 LOC108269388 LOC108255145 LOC108255145 sh21b sh21b cactin cactin nod2 nod2 mmrn2 mmrn2 LOC108273898 LOC108273898 traf3ip2 traf3ip2 tnfaip3 tnfaip3 irak3 irak3 gfer gfer polr3b polr3b cd180 cd180 zdhhc1 zdhhc1 fbxo38 fbxo38 LOC108271679 LOC108271679 LOC108265637 LOC108265637 rnf216 rnf216 tspan6 tspan6 fgl2 fgl2 nono nono EIF2AK4 EIF2AK4 Eif2ak4 Eif2ak4 card9 card9 rnf185 rnf185 LOC108264943 LOC108264943 fam3a fam3a LOC108277141 LOC108277141 nfe2l2 nfe2l2 LOC108256977 LOC108256977 dhx58 dhx58 n4bp1 n4bp1 ENSIPUP00000030132 ENSIPUP00000030132 pum1 pum1 LOC108257753 LOC108257753 med1 med1 LOC108278595 LOC108278595 ttll12 ttll12 LOC108270566 LOC108270566 LOC108272987 LOC108272987 LOC108255410 LOC108255410 LOC108255725 LOC108255725 LOC108255722 LOC108255722 acod1 acod1 LOC108261706 LOC108261706 LOC108272184 LOC108272184 LOC108257376 LOC108257376 ENSIPUP00000033776 ENSIPUP00000033776 LOC108274970 LOC108274970 mul1 mul1 LOC108267461 LOC108267461 LOC108256534 LOC108256534 LOC108256689 LOC108256689 LOC108256692 LOC108256692 LOC108256693 LOC108256693 LOC108256150 LOC108256150 LOC108256466 LOC108256466 CXorf21 CXorf21 ncf1 ncf1 trim44 trim44 LOC108270455 LOC108270455 nfkbil1 nfkbil1 ikbke ikbke LOC108271999 LOC108271999 znfx1 znfx1 LOC108279108 LOC108279108 ufd1 ufd1 grn grn ercc6 ercc6 LOC108261162 LOC108261162 lyar lyar OTOP1 OTOP1 ENSIPUP00000000585 ENSIPUP00000000585 LOC108273140 LOC108273140 ENSIPUP00000000681 ENSIPUP00000000681 mettl3 mettl3 ENSIPUP00000000825 ENSIPUP00000000825 xrcc6 xrcc6 akirin1 akirin1 LOC108255167 LOC108255167 pias4 pias4 LOC108280976 LOC108280976 LOC101154666 LOC101154666 riok3 riok3 nmi nmi arg2 arg2 dusp10 dusp10 LOC108263800 LOC108263800 rnf31 rnf31 LOC100305014 LOC100305014 ahr ahr LOC108280771 LOC108280771 rps19 rps19 tkfc tkfc ddx58 ddx58 adar adar ENSIPUP00000004727 ENSIPUP00000004727 LOC108270447 LOC108270447 gsdme gsdme ube2k ube2k atg5 atg5 polr3d polr3d LOC108266654 LOC108266654 trim62 trim62 LOC108276113 LOC108276113 LOC108269160 LOC108269160 dcst1 dcst1 tbk1 tbk1 LOC108272282 LOC108272282 sash1 sash1 LOC108271158 LOC108271158 LOC108269845 LOC108269845 trafd1 trafd1 ENSIPUP00000008437 ENSIPUP00000008437 LOC108275399 LOC108275399 dtx3 dtx3 LOC108259484 LOC108259484 LOC108259166 LOC108259166 xrcc5 xrcc5 LOC108264585 LOC108264585 LOC100304688 LOC100304688 supt5h supt5h appl1 appl1 LOC108273952 LOC108273952 lrsam1 lrsam1 gpatch3 gpatch3 LOC108261378 LOC108261378 ENSIPUP00000011491 ENSIPUP00000011491 LOC108257733 LOC108257733 LOC108257559 LOC108257559 nop53 nop53 atg12 atg12 pqbp1 pqbp1 LOC108255862 LOC108255862 nod1 nod1 LOC108272457 LOC108272457 ENSIPUP00000013199 ENSIPUP00000013199 ripk2 ripk2 lsm14a lsm14a ifi35 ifi35 LOC108276572 LOC108276572 il12b il12b tomm70 tomm70 lamp1 lamp1 nlrx1 nlrx1 ythdf2 ythdf2 rnf26 rnf26 LOC108261848 LOC108261848 emilin1 emilin1 LOC108272603 LOC108272603 sting1 sting1 LOC108269793 LOC108269793 LOC108269798 LOC108269798 LOC108273904 LOC108273904 myd88 myd88 ENSIPUP00000018398 ENSIPUP00000018398 ENSIPUP00000018443 ENSIPUP00000018443 c1qbp c1qbp appl2 appl2 sfpq sfpq
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr3fDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (314 aa)
LOC108262464Poliovirus receptor homolog. (185 aa)
LOC108277410Cell adhesion molecule 1-like isoform X3. (422 aa)
sh21aSH2 domain-containing protein 1A. (113 aa)
socs1Suppressor of cytokine signaling 1. (230 aa)
ythdf3YTH domain-containing family protein 3. (604 aa)
zmpste24CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (470 aa)
faddFAS-associated death domain protein. (210 aa)
samhd1Deoxynucleoside triphosphate triphosphohydrolase SAMHD1. (626 aa)
wap65-2Warm temperature acclimation protein 65 KDa-2 isoform X2. (437 aa)
LOC108270067Ribonuclease ZC3H12A-like. (605 aa)
LOC108269388Cis-aconitate decarboxylase-like. (498 aa)
LOC108255145Akirin-2-like. (211 aa)
sh21bSh2 domain-containing protein 1b isoform X1. (138 aa)
cactinCactin. (865 aa)
nod2Nucleotide-binding oligomerization domain-containing protein 2. (981 aa)
mmrn2Multimerin-2. (1061 aa)
LOC108273898Interferon regulatory factor 3-like. (462 aa)
traf3ip2Adapter protein CIKS. (409 aa)
tnfaip3Tumor necrosis factor alpha-induced protein 3. (764 aa)
irak3Interleukin-1 receptor-associated kinase 3. (609 aa)
gferSulfhydryl oxidase. (179 aa)
polr3bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
cd180CD180 antigen isoform X1. (664 aa)
zdhhc1Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (572 aa)
fbxo38F-box only protein 38 isoform X1. (1095 aa)
LOC108271679Fibroleukin-like isoform X1. (395 aa)
LOC108265637Plasma protease C1 inhibitor-like; Belongs to the serpin family. (640 aa)
rnf216E3 ubiquitin-protein ligase RNF216 isoform X1. (901 aa)
tspan6Tetraspanin. (251 aa)
fgl2Fibroleukin. (429 aa)
nononon-POU domain-containing octamer-binding protein. (436 aa)
EIF2AK4eIF-2-alpha kinase GCN2 isoform X1. (1396 aa)
Eif2ak4Eukaryotic translation initiation factor 2 alpha kinase 4. (141 aa)
card9Caspase recruitment domain-containing protein 9. (564 aa)
rnf185E3 ubiquitin-protein ligase RNF185 isoform X1. (196 aa)
LOC108264943LOW QUALITY PROTEIN: cyclic AMP-responsive element-binding protein 3-like protein 3. (426 aa)
fam3aProtein FAM3A. (229 aa)
LOC108277141Poly [ADP-ribose] polymerase. (1961 aa)
nfe2l2Nuclear factor erythroid 2-related factor 2. (586 aa)
LOC108256977Cyclic GMP-AMP synthase-like. (468 aa)
dhx58Putative ATP-dependent RNA helicase DHX58. (677 aa)
n4bp1NEDD4-binding protein 1. (841 aa)
ENSIPUP00000030132Poliovirus receptor-related protein 2. (250 aa)
pum1Pumilio homolog 1 isoform X1. (1159 aa)
LOC108257753Fibrinogen-like protein 1. (421 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1778 aa)
LOC108278595Uncharacterized protein LOC108278567. (879 aa)
ttll12Tubulin--tyrosine ligase-like protein 12. (652 aa)
LOC108270566Adapter protein CIKS-like isoform X1. (107 aa)
LOC108272987Uncharacterized protein LOC108272987. (2000 aa)
LOC108255410Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like. (146 aa)
LOC108255725Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X2. (164 aa)
LOC108255722Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X2. (604 aa)
acod1Cis-aconitate decarboxylase. (482 aa)
LOC108261706Uncharacterized protein LOC108261706. (2221 aa)
LOC108272184Uncharacterized protein LOC108272184 isoform X2. (424 aa)
LOC108257376Granulins-like isoform X2. (398 aa)
ENSIPUP00000033776annotation not available (64 aa)
LOC108274970Protein LSM14 homolog A-like isoform X2. (459 aa)
mul1Mitochondrial ubiquitin ligase activator of NFKB 1. (348 aa)
LOC108267461RNA-binding protein 4.1-like. (346 aa)
LOC108256534Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (428 aa)
LOC108256689Free fatty acid receptor 2-like. (326 aa)
LOC108256692Free fatty acid receptor 3-like. (320 aa)
LOC108256693Free fatty acid receptor 2-like isoform X1. (336 aa)
LOC108256150Free fatty acid receptor 3-like. (325 aa)
LOC108256466Free fatty acid receptor 2-like; Belongs to the G-protein coupled receptor 1 family. (315 aa)
CXorf21Uncharacterized protein CXorf21 homolog. (266 aa)
ncf1Neutrophil cytosol factor 1. (401 aa)
trim44Tripartite motif-containing protein 44 isoform X2. (333 aa)
LOC108270455LOW QUALITY PROTEIN: sushi domain-containing protein 4-like. (480 aa)
nfkbil1NF-kappa-B inhibitor-like protein 1. (338 aa)
ikbkeInhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1. (722 aa)
LOC108271999E3 ubiquitin-protein ligase. (847 aa)
znfx1NFX1-type zinc finger-containing protein 1. (1003 aa)
LOC108279108Cell adhesion molecule 1-like isoform X8. (381 aa)
ufd1Ubiquitin fusion degradation protein 1 homolog isoform X2. (308 aa)
grnGranulins isoform X1. (666 aa)
ercc6DNA excision repair protein ERCC-6. (1409 aa)
LOC108261162Ubiquitin-conjugating enzyme E2 K-like; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
lyarCell growth-regulating nucleolar protein isoform X1. (337 aa)
OTOP1Otopetrin-1. (600 aa)
ENSIPUP00000000585annotation not available (139 aa)
LOC108273140Lymphocyte antigen 86-like. (158 aa)
ENSIPUP00000000681annotation not available (380 aa)
mettl3N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (591 aa)
ENSIPUP00000000825annotation not available (191 aa)
xrcc6X-ray repair cross-complementing protein 6. (609 aa)
akirin1Akirin-1. (182 aa)
LOC108255167E3 ubiquitin-protein ligase DTX3L-like isoform X2. (876 aa)
pias4E3 SUMO-protein ligase PIAS4. (506 aa)
LOC108280976E3 ubiquitin-protein ligase DTX3L-like. (328 aa)
LOC101154666Matrin-3. (1087 aa)
riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (504 aa)
nmiN-myc-interactor. (384 aa)
arg2Arginase. (324 aa)
dusp10Dual specificity protein phosphatase 10 isoform X1. (461 aa)
LOC108263800Caspase-6-like; Belongs to the peptidase C14A family. (306 aa)
rnf31E3 ubiquitin-protein ligase RNF31. (984 aa)
LOC100305014DAP12 isoform X1. (116 aa)
ahrAryl hydrocarbon receptor isoform X2. (888 aa)
LOC108280771Uncharacterized protein LOC108280771. (868 aa)
rps1940S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family. (147 aa)
tkfctriokinase/FMN cyclase isoform X3. (587 aa)
ddx58Probable ATP-dependent RNA helicase DDX58. (898 aa)
adarDouble-stranded RNA-specific adenosine deaminase. (1366 aa)
ENSIPUP00000004727annotation not available (151 aa)
LOC108270447SAM and SH3 domain-containing protein 1-like isoform X1. (1027 aa)
gsdmeNon-syndromic hearing impairment protein 5. (484 aa)
ube2kUbiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
polr3dDNA-directed RNA polymerase III subunit RPC4 isoform X1. (392 aa)
LOC108266654Aryl hydrocarbon receptor-like. (955 aa)
trim62E3 ubiquitin-protein ligase TRIM62 isoform X2. (477 aa)
LOC108276113E3 ubiquitin-protein ligase. (863 aa)
LOC108269160Uncharacterized protein LOC108269160. (1699 aa)
dcst1DC-STAMP domain-containing protein 1 isoform X1. (648 aa)
tbk1Serine/threonine-protein kinase TBK1 isoform X1. (727 aa)
LOC108272282Uncharacterized protein LOC108272282 isoform X2. (682 aa)
sash1SAM and SH3 domain-containing protein 1 isoform X2. (1171 aa)
LOC108271158Receptor-interacting serine/threonine-protein kinase 2-like isoform X1. (531 aa)
LOC108269845Akirin-2-like. (181 aa)
trafd1TRAF-type zinc finger domain-containing protein 1 isoform X1. (566 aa)
ENSIPUP00000008437annotation not available (89 aa)
LOC108275399Ribonuclease ZC3H12A-like. (623 aa)
dtx3Probable E3 ubiquitin-protein ligase DTX3 isoform X1. (404 aa)
LOC108259484Aryl hydrocarbon receptor-like isoform X2. (1019 aa)
LOC108259166Aryl hydrocarbon receptor-like. (891 aa)
xrcc5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (726 aa)
LOC108264585Cytochrome b-245 light chain; Critical component of the membrane-bound oxidase of phagocytes that generates superoxide. Associates with NOX3 to form a functional NADPH oxidase constitutively generating superoxide. (186 aa)
LOC100304688Uncharacterized protein LOC100304688. (172 aa)
supt5hTranscription elongation factor SPT5. (1084 aa)
appl1DCC-interacting protein 13-alpha isoform X3. (678 aa)
LOC108273952Multimerin-2-like isoform X1. (838 aa)
lrsam1E3 ubiquitin-protein ligase LRSAM1 isoform X1. (726 aa)
gpatch3G patch domain-containing protein 3. (514 aa)
LOC108261378Zinc finger CCHC domain-containing protein 3-like. (439 aa)
ENSIPUP00000011491CD226 molecule. (326 aa)
LOC108257733EMILIN-1-like. (1027 aa)
LOC108257559interleukin-17F-like. (159 aa)
nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (513 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (125 aa)
pqbp1Polyglutamine-binding protein 1 isoform X1. (241 aa)
LOC108255862E3 ubiquitin-protein ligase DTX3L-like. (429 aa)
nod1Nucleotide-binding oligomerization domain-containing protein 1. (946 aa)
LOC108272457Free fatty acid receptor 2-like; Belongs to the G-protein coupled receptor 1 family. (310 aa)
ENSIPUP00000013199annotation not available (174 aa)
ripk2Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. (579 aa)
lsm14aProtein LSM14 homolog A isoform X1. (495 aa)
ifi35Interferon-induced 35 kDa protein. (371 aa)
LOC108276572Granulins-like isoform X1. (922 aa)
il12bInterleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (316 aa)
tomm70Mitochondrial import receptor subunit TOM70. (573 aa)
lamp1Lysosome-associated membrane glycoprotein 1. (412 aa)
nlrx1NLR family member X1 isoform X2. (1001 aa)
ythdf2YTH domain-containing family protein 2. (607 aa)
rnf26RING finger protein 26. (440 aa)
LOC108261848Caspase-6-like; Belongs to the peptidase C14A family. (165 aa)
emilin1EMILIN-1. (1056 aa)
LOC108272603E3 ubiquitin-protein ligase DTX3L-like. (157 aa)
sting1Stimulator of Interferon genes protein. (395 aa)
LOC108269793interleukin-17F-like. (155 aa)
LOC108269798interleukin-17A-like. (125 aa)
LOC108273904Arginase. (331 aa)
myd88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (279 aa)
ENSIPUP00000018398annotation not available (440 aa)
ENSIPUP00000018443annotation not available (456 aa)
c1qbpComplement component 1 Q subcomponent-binding protein, mitochondrial. (289 aa)
appl2DCC-interacting protein 13-beta. (700 aa)
sfpqSplicing factor, proline- and glutamine-rich isoform X2. (586 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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