52 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ccdc47	Coiled-coil domain-containing protein 47. (506 aa)
	suco	SUN domain-containing ossification factor isoform X1. (1319 aa)
	LOC108267851	Myocilin-like. (434 aa)
	LOC108268208	SUN domain-containing ossification factor-like isoform X1. (977 aa)
	p2rx3	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (362 aa)
	maco1	Macoilin. (686 aa)
	hcrt	Orexin. (157 aa)
	plod2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1. (750 aa)
	LOC108256246	Phosphoinositide phospholipase C. (1108 aa)
	rpl6	60S ribosomal protein L6 isoform X1. (272 aa)
	lcn2	Neutrophil gelatinase-associated lipocalin; Belongs to the calycin superfamily. Lipocalin family. (207 aa)
	epm2a	Laforin. (323 aa)
	sec63	Translocation protein SEC63 homolog. (763 aa)
	LOC108277336	Brain-specific angiogenesis inhibitor 1-associated protein 2-like isoform X2. (533 aa)
	srprb	Signal recognition particle receptor subunit beta. (264 aa)
	plod1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1. (733 aa)
	rps29	40S ribosomal protein S29. (56 aa)
	ogfod2	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2. (339 aa)
	sppl3	Signal Peptide peptidase-like 3. (382 aa)
	SEC61A1	Protein transport protein Sec61 subunit alpha-like 1. (476 aa)
	LOC108260877	Protein lin-28 homolog A-like isoform X1. (203 aa)
	LOC108270067	Ribonuclease ZC3H12A-like. (605 aa)
	LOC108268552	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (389 aa)
	hm13	Minor histocompatibility antigen H13 isoform X2. (376 aa)
	plod3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3. (730 aa)
	LOC108266466	Mannose-binding protein C-like isoform X1. (157 aa)
	rps21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
	LOC108275399	Ribonuclease ZC3H12A-like. (623 aa)
	tmem97	Transmembrane protein 97; Intracellular orphan receptor that binds numerous drugs and which is highly expressed in various proliferating cells. Corresponds to the sigma-2 receptor, which is thought to play important role in regulating cell survival, morphology and differentiation. May play a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase. May alter the activity of some cytochrome P450 proteins. (177 aa)
	LOC108273716	Brain-specific angiogenesis inhibitor 1-associated protein 2-like isoform X5. (535 aa)
	LOC108262041	SUN domain-containing ossification factor-like. (484 aa)
	rps23	40S ribosomal protein S23. (143 aa)
	rpl18	60S ribosomal protein L18; Component of the large ribosomal subunit. (230 aa)
	rps28	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (120 aa)
	LOC108261015	Lecithin retinol acyltransferase-like. (234 aa)
	fkrp	Fukutin-related protein. (495 aa)
	LOC108272151	Protein transport protein Sec61 subunit alpha-like 1. (479 aa)
	lrpap1	Alpha-2-macroglobulin receptor-associated protein. (347 aa)
	sec61b	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (97 aa)
	ncf1	Neutrophil cytosol factor 1. (401 aa)
	LOC108258977	Lecithin retinol acyltransferase-like. (235 aa)
	LOC108258976	Lecithin retinol acyltransferase-like isoform X1. (259 aa)
	pi4kb	Phosphatidylinositol 4-kinase beta isoform X1; Belongs to the PI3/PI4-kinase family. (858 aa)
	rpl27	60S ribosomal protein L27; Component of the large ribosomal subunit. (136 aa)
	LOC108258171	Macoilin-1-like. (626 aa)
	srpra	Signal recognition particle receptor subunit alpha isoform X1. (611 aa)
	hgfac	Hepatocyte growth factor activator isoform X1. (661 aa)
	pcsk1	Neuroendocrine convertase 1; Belongs to the peptidase S8 family. (769 aa)
	LOC108273293	Protein lin-28 homolog A-like. (193 aa)
	ckap4	Cytoskeleton-associated protein 4. (560 aa)
	myoc	Myocilin isoform X1. (471 aa)
	LOC108273165	Macoilin-1-like isoform X1. (646 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108258976	LOC108258977	ENSIPUP00000035856	ENSIPUP00000035854	Lecithin retinol acyltransferase-like isoform X1.	Lecithin retinol acyltransferase-like.	0.903
LOC108258976	LOC108261015	ENSIPUP00000035856	ENSIPUP00000026523	Lecithin retinol acyltransferase-like isoform X1.	Lecithin retinol acyltransferase-like.	0.904
LOC108258977	LOC108258976	ENSIPUP00000035854	ENSIPUP00000035856	Lecithin retinol acyltransferase-like.	Lecithin retinol acyltransferase-like isoform X1.	0.903
LOC108258977	LOC108261015	ENSIPUP00000035854	ENSIPUP00000026523	Lecithin retinol acyltransferase-like.	Lecithin retinol acyltransferase-like.	0.903
LOC108260877	rps23	ENSIPUP00000022070	ENSIPUP00000010510	Protein lin-28 homolog A-like isoform X1.	40S ribosomal protein S23.	0.481
LOC108261015	LOC108258976	ENSIPUP00000026523	ENSIPUP00000035856	Lecithin retinol acyltransferase-like.	Lecithin retinol acyltransferase-like isoform X1.	0.904
LOC108261015	LOC108258977	ENSIPUP00000026523	ENSIPUP00000035854	Lecithin retinol acyltransferase-like.	Lecithin retinol acyltransferase-like.	0.903
LOC108266466	ckap4	ENSIPUP00000007491	ENSIPUP00000018355	Mannose-binding protein C-like isoform X1.	Cytoskeleton-associated protein 4.	0.418
LOC108266466	hgfac	ENSIPUP00000007491	ENSIPUP00000014989	Mannose-binding protein C-like isoform X1.	Hepatocyte growth factor activator isoform X1.	0.441
LOC108272151	ccdc47	ENSIPUP00000028316	ENSIPUP00000018844	Protein transport protein Sec61 subunit alpha-like 1.	Coiled-coil domain-containing protein 47.	0.817
LOC108272151	hm13	ENSIPUP00000028316	ENSIPUP00000025845	Protein transport protein Sec61 subunit alpha-like 1.	Minor histocompatibility antigen H13 isoform X2.	0.534
LOC108272151	rpl18	ENSIPUP00000028316	ENSIPUP00000011535	Protein transport protein Sec61 subunit alpha-like 1.	60S ribosomal protein L18; Component of the large ribosomal subunit.	0.768
LOC108272151	rpl27	ENSIPUP00000028316	ENSIPUP00000014778	Protein transport protein Sec61 subunit alpha-like 1.	60S ribosomal protein L27; Component of the large ribosomal subunit.	0.819
LOC108272151	rpl6	ENSIPUP00000028316	ENSIPUP00000029903	Protein transport protein Sec61 subunit alpha-like 1.	60S ribosomal protein L6 isoform X1.	0.815
LOC108272151	rps21	ENSIPUP00000028316	ENSIPUP00000007932	Protein transport protein Sec61 subunit alpha-like 1.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.561
LOC108272151	rps23	ENSIPUP00000028316	ENSIPUP00000010510	Protein transport protein Sec61 subunit alpha-like 1.	40S ribosomal protein S23.	0.950
LOC108272151	rps28	ENSIPUP00000028316	ENSIPUP00000012895	Protein transport protein Sec61 subunit alpha-like 1.	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family.	0.561
LOC108272151	rps29	ENSIPUP00000028316	ENSIPUP00000032950	Protein transport protein Sec61 subunit alpha-like 1.	40S ribosomal protein S29.	0.934
LOC108272151	sec61b	ENSIPUP00000028316	ENSIPUP00000028861	Protein transport protein Sec61 subunit alpha-like 1.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.944
LOC108272151	sec63	ENSIPUP00000028316	ENSIPUP00000004232	Protein transport protein Sec61 subunit alpha-like 1.	Translocation protein SEC63 homolog.	0.997