34 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108280003	Semaphorin-3aa-like; Belongs to the semaphorin family. (853 aa)
	rest	RE1-silencing transcription factor. (991 aa)
	flt4	Vascular endothelial growth factor receptor 3 isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1377 aa)
	LOC108277434	Rho-related GTP-binding protein RhoG-like. (190 aa)
	LOC108258170	Cadherin-2; Cadherins are calcium-dependent cell adhesion proteins. (896 aa)
	rhogd	Rho-related GTP-binding protein RhoG-like. (206 aa)
	chodl	Chondrolectin isoform X2. (293 aa)
	smn1	Survival motor neuron protein 1 isoform X1. (315 aa)
	nog	Noggin; Belongs to the noggin family. (225 aa)
	CDH2	Cadherin-2-like isoform X1; Cadherins are calcium-dependent cell adhesion proteins. (908 aa)
	plxna3	plexin-A3. (1855 aa)
	LOC108274702	Protein phosphatase 1 regulatory subunit. (185 aa)
	ntn1	Netrin-1. (603 aa)
	LOC108264812	Semaphorin-3ab; Belongs to the semaphorin family. (780 aa)
	rnf165	RING finger protein 165. (308 aa)
	LOC108274409	Netrin-3-like. (575 aa)
	LOC108272525	Netrin-1-like. (650 aa)
	LOC108267835	Netrin-1-like. (876 aa)
	LOC108280865	Vascular endothelial growth factor A-A-like; Belongs to the PDGF/VEGF growth factor family. (185 aa)
	LOC108272104	semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (801 aa)
	cdk5	Cell division protein kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC108265796	RING finger protein 165-like isoform X1. (354 aa)
	LOC108279504	Protein phosphatase 1 regulatory subunit 12A-like isoform X2. (117 aa)
	ppp1r12a	Protein phosphatase 1 regulatory subunit. (821 aa)
	rhog	Rho-related GTP-binding protein RhoG. (191 aa)
	nkx2-2	Homeobox protein Nkx-2.2a. (268 aa)
	LOC108277614	LIM/homeobox protein Lhx1. (405 aa)
	plxna1	plexin-A1. (1881 aa)
	sema3f	semaphorin-3F isoform X2; Belongs to the semaphorin family. (789 aa)
	chst11	Carbohydrate sulfotransferase. (352 aa)
	tmem41b	Transmembrane protein 41B isoform X1. (281 aa)
	LOC108272391	Acetylcholine receptor subunit alpha-like isoform X1. (462 aa)
	LOC108272389	Carboxylesterase notum2-like. (480 aa)
	e2f8	Transcription factor E2F8 isoform X1. (854 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC108258170	ENSIPUP00000017253	ENSIPUP00000022150	Cadherin-2-like isoform X1; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin-2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC108258170	CDH2	ENSIPUP00000022150	ENSIPUP00000017253	Cadherin-2; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin-2-like isoform X1; Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC108264812	cdk5	ENSIPUP00000009741	ENSIPUP00000000106	Semaphorin-3ab; Belongs to the semaphorin family.	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	0.570
LOC108264812	plxna1	ENSIPUP00000009741	ENSIPUP00000032314	Semaphorin-3ab; Belongs to the semaphorin family.	plexin-A1.	0.569
LOC108264812	plxna3	ENSIPUP00000009741	ENSIPUP00000017071	Semaphorin-3ab; Belongs to the semaphorin family.	plexin-A3.	0.569
LOC108277434	rhog	ENSIPUP00000022729	ENSIPUP00000036415	Rho-related GTP-binding protein RhoG-like.	Rho-related GTP-binding protein RhoG.	0.901
LOC108277434	rhogd	ENSIPUP00000022729	ENSIPUP00000021989	Rho-related GTP-binding protein RhoG-like.	Rho-related GTP-binding protein RhoG-like.	0.901
LOC108280003	cdk5	ENSIPUP00000026679	ENSIPUP00000000106	Semaphorin-3aa-like; Belongs to the semaphorin family.	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	0.570
LOC108280003	plxna1	ENSIPUP00000026679	ENSIPUP00000032314	Semaphorin-3aa-like; Belongs to the semaphorin family.	plexin-A1.	0.576
LOC108280003	plxna3	ENSIPUP00000026679	ENSIPUP00000017071	Semaphorin-3aa-like; Belongs to the semaphorin family.	plexin-A3.	0.576
LOC108280865	flt4	ENSIPUP00000001260	ENSIPUP00000025090	Vascular endothelial growth factor A-A-like; Belongs to the PDGF/VEGF growth factor family.	Vascular endothelial growth factor receptor 3 isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.840
cdk5	LOC108264812	ENSIPUP00000000106	ENSIPUP00000009741	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	Semaphorin-3ab; Belongs to the semaphorin family.	0.570
cdk5	LOC108280003	ENSIPUP00000000106	ENSIPUP00000026679	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	Semaphorin-3aa-like; Belongs to the semaphorin family.	0.570
cdk5	plxna1	ENSIPUP00000000106	ENSIPUP00000032314	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	plexin-A1.	0.446
cdk5	plxna3	ENSIPUP00000000106	ENSIPUP00000017071	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	plexin-A3.	0.446
chodl	tmem41b	ENSIPUP00000020242	ENSIPUP00000029740	Chondrolectin isoform X2.	Transmembrane protein 41B isoform X1.	0.530
flt4	LOC108280865	ENSIPUP00000025090	ENSIPUP00000001260	Vascular endothelial growth factor receptor 3 isoform X2; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Vascular endothelial growth factor A-A-like; Belongs to the PDGF/VEGF growth factor family.	0.840
plxna1	LOC108264812	ENSIPUP00000032314	ENSIPUP00000009741	plexin-A1.	Semaphorin-3ab; Belongs to the semaphorin family.	0.569
plxna1	LOC108280003	ENSIPUP00000032314	ENSIPUP00000026679	plexin-A1.	Semaphorin-3aa-like; Belongs to the semaphorin family.	0.576
plxna1	cdk5	ENSIPUP00000032314	ENSIPUP00000000106	plexin-A1.	Cell division protein kinase 5; Belongs to the protein kinase superfamily.	0.446