STRINGSTRING
ctdp1 ctdp1 chmp7 chmp7 ppp2r2d ppp2r2d spast spast ube2c ube2c LOC108266611 LOC108266611 LOC108271228 LOC108271228 clasp2 clasp2 chmp2a chmp2a sirt7 sirt7 ube2s ube2s
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ctdp1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (911 aa)
chmp7Charged multivesicular body protein 7. (443 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
spastSpastin; Belongs to the AAA ATPase family. (547 aa)
ube2cUbiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
LOC108266611CLIP-associating protein 1-A-like isoform X5. (1502 aa)
LOC108271228CLIP-associating protein 1-A-like isoform X5. (1494 aa)
clasp2CLIP-associating protein 2 isoform X12. (1499 aa)
chmp2aCharged multivesicular body protein 2A. (222 aa)
sirt7NAD-dependent protein deacetylase sirtuin-7. (411 aa)
ube2sUbiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (228 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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