STRINGSTRING
trim32 trim32 LOC108261162 LOC108261162 ube2k ube2k ube2s ube2s prkn prkn ube2c ube2c
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
trim32E3 ubiquitin-protein ligase TRIM32. (674 aa)
LOC108261162Ubiquitin-conjugating enzyme E2 K-like; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
ube2kUbiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
ube2sUbiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (228 aa)
prknParkin RBR E3 ubiquitin protein ligase. (330 aa)
ube2cUbiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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