47 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cul2	Cullin-2 isoform X1; Belongs to the cullin family. (807 aa)
	fbxl12	F-box/LRR-repeat protein 12. (362 aa)
	LOC108275473	F-box only protein 41-like isoform X3. (716 aa)
	fbxl5	F-box/LRR-repeat protein 5. (689 aa)
	fbxl18	F-box/LRR-repeat protein 18. (765 aa)
	skp2	S-phase kinase-associated protein 2. (411 aa)
	LOC108280577	F-box/LRR-repeat protein 7 isoform X1. (478 aa)
	fbxl6	F-box/LRR-repeat protein 6. (569 aa)
	LOC108255117	F-box only protein 2-like. (176 aa)
	fbxo31	F-box only protein 31. (344 aa)
	fbxl14	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14. (400 aa)
	fbxl4	F-box/LRR-repeat protein 4. (604 aa)
	fbxl8	F-box/LRR-repeat protein 8 isoform X2. (361 aa)
	cul1	Cullin 1. (861 aa)
	fbxl15	F-box/LRR-repeat protein 15. (310 aa)
	kif14	Kinesin-like protein KIF14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1561 aa)
	dmac2	ATP synthase subunit s-like protein. (257 aa)
	LOC108275024	F-box/WD repeat-containing protein 11-like isoform X1. (567 aa)
	LOC108280768	Cullin-1; Belongs to the cullin family. (777 aa)
	cul4a	cullin-4A; Belongs to the cullin family. (741 aa)
	LOC108276242	F-box only protein 6-like isoform X1. (328 aa)
	fbxl20	F-box/LRR-repeat protein 20. (407 aa)
	ccnf	Cyclin-F; Belongs to the cyclin family. (772 aa)
	LOC108268915	F-box/LRR-repeat protein 2-like. (643 aa)
	fbxo33	F-box only protein 33. (488 aa)
	fbxl16	F-box/LRR-repeat protein 16. (460 aa)
	fbxo9	F-box only protein 9 isoform X1. (423 aa)
	LOC108260496	F-box only protein 41-like. (780 aa)
	fbxw5	F-box/WD repeat-containing protein 5. (613 aa)
	fbxo38	F-box only protein 38 isoform X1. (1095 aa)
	amn1	Protein AMN1 homolog. (247 aa)
	fbxo42	F-box only protein 42. (699 aa)
	FBXO4	F-box only protein 4-like. (157 aa)
	nccrp1	NCC receptor protein 1. (235 aa)
	cul4b	cullin-4B; Belongs to the cullin family. (854 aa)
	LOC108277126	F-box/WD repeat-containing protein 11 isoform X1. (525 aa)
	skp1	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (201 aa)
	fbxl2	F-box/LRR-repeat protein 2 isoform X1. (474 aa)
	fbxl22	F-box and leucine-rich protein 22. (227 aa)
	LOC108279000	E3 ubiquitin-protein ligase RBX1-like. (108 aa)
	rbx1	E3 ubiquitin-protein ligase RBX1. (108 aa)
	LOC108279751	F-box/LRR-repeat protein 14. (400 aa)
	fbxo48	F-box only protein 48. (152 aa)
	fbxw4	F-box/WD repeat-containing protein 4. (393 aa)
	LOC108271824	F-box/LRR-repeat protein 7-like isoform X1. (495 aa)
	fbxl17-2	F-box/LRR-repeat protein 17. (345 aa)
	fbxl17	F-box and leucine rich repeat protein 17. (204 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBXO4	LOC108279000	ENSIPUP00000027973	ENSIPUP00000032281	F-box only protein 4-like.	E3 ubiquitin-protein ligase RBX1-like.	0.479
FBXO4	LOC108280768	ENSIPUP00000027973	ENSIPUP00000013535	F-box only protein 4-like.	Cullin-1; Belongs to the cullin family.	0.865
FBXO4	ccnf	ENSIPUP00000027973	ENSIPUP00000017882	F-box only protein 4-like.	Cyclin-F; Belongs to the cyclin family.	0.420
FBXO4	cul1	ENSIPUP00000027973	ENSIPUP00000007459	F-box only protein 4-like.	Cullin 1.	0.865
FBXO4	cul2	ENSIPUP00000027973	ENSIPUP00000000377	F-box only protein 4-like.	Cullin-2 isoform X1; Belongs to the cullin family.	0.483
FBXO4	fbxl12	ENSIPUP00000027973	ENSIPUP00000000391	F-box only protein 4-like.	F-box/LRR-repeat protein 12.	0.422
FBXO4	fbxo9	ENSIPUP00000027973	ENSIPUP00000023166	F-box only protein 4-like.	F-box only protein 9 isoform X1.	0.613
FBXO4	rbx1	ENSIPUP00000027973	ENSIPUP00000033830	F-box only protein 4-like.	E3 ubiquitin-protein ligase RBX1.	0.479
FBXO4	skp1	ENSIPUP00000027973	ENSIPUP00000030698	F-box only protein 4-like.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.968
LOC108255117	LOC108268915	ENSIPUP00000005120	ENSIPUP00000018461	F-box only protein 2-like.	F-box/LRR-repeat protein 2-like.	0.484
LOC108255117	LOC108275024	ENSIPUP00000005120	ENSIPUP00000012960	F-box only protein 2-like.	F-box/WD repeat-containing protein 11-like isoform X1.	0.913
LOC108255117	LOC108276242	ENSIPUP00000005120	ENSIPUP00000016120	F-box only protein 2-like.	F-box only protein 6-like isoform X1.	0.907
LOC108255117	LOC108277126	ENSIPUP00000005120	ENSIPUP00000029877	F-box only protein 2-like.	F-box/WD repeat-containing protein 11 isoform X1.	0.913
LOC108255117	LOC108279000	ENSIPUP00000005120	ENSIPUP00000032281	F-box only protein 2-like.	E3 ubiquitin-protein ligase RBX1-like.	0.572
LOC108255117	LOC108280768	ENSIPUP00000005120	ENSIPUP00000013535	F-box only protein 2-like.	Cullin-1; Belongs to the cullin family.	0.733
LOC108255117	cul1	ENSIPUP00000005120	ENSIPUP00000007459	F-box only protein 2-like.	Cullin 1.	0.733
LOC108255117	cul2	ENSIPUP00000005120	ENSIPUP00000000377	F-box only protein 2-like.	Cullin-2 isoform X1; Belongs to the cullin family.	0.434
LOC108255117	fbxo42	ENSIPUP00000005120	ENSIPUP00000026414	F-box only protein 2-like.	F-box only protein 42.	0.403
LOC108255117	rbx1	ENSIPUP00000005120	ENSIPUP00000033830	F-box only protein 2-like.	E3 ubiquitin-protein ligase RBX1.	0.572
LOC108255117	skp1	ENSIPUP00000005120	ENSIPUP00000030698	F-box only protein 2-like.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.918