20 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nck1	Cytoplasmic protein. (381 aa)
	LOC108262840	Dickkopf-related protein 1-like. (282 aa)
	epm2a	Laforin. (323 aa)
	nck2	Cytoplasmic protein. (397 aa)
	LOC108276645	LOW QUALITY PROTEIN: inositol polyphosphate 5-phosphatase K-like. (429 aa)
	BDKRB2	B2 bradykinin receptor-like; Belongs to the G-protein coupled receptor 1 family. (316 aa)
	pwp1	Periodic tryptophan protein 1 homolog. (483 aa)
	paqr3	Progestin and adipoQ receptor family member 3 isoform X1. (312 aa)
	dkk1	Dickkopf-related protein 1. (236 aa)
	LOC108272203	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (210 aa)
	LOC108273233	Cytoplasmic protein NCK2-like. (370 aa)
	LOC108269231	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (180 aa)
	LOC108280806	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (158 aa)
	LOC108277943	Inositol polyphosphate 5-phosphatase K-like isoform X1. (602 aa)
	LOC108270970	Apoptosis regulator BAX-like. (202 aa)
	bax	Apoptosis regulator BAX. (189 aa)
	LOC108257663	B2 bradykinin receptor-like; Belongs to the G-protein coupled receptor 1 family. (424 aa)
	LOC108255881	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like isoform X1. (580 aa)
	LOC108276876	Progestin and adipoQ receptor family member 3-like. (308 aa)
	LOC108276637	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like. (516 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255881	LOC108277943	ENSIPUP00000030508	ENSIPUP00000021001	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like isoform X1.	Inositol polyphosphate 5-phosphatase K-like isoform X1.	0.903
LOC108270970	bax	ENSIPUP00000021392	ENSIPUP00000022942	Apoptosis regulator BAX-like.	Apoptosis regulator BAX.	0.892
LOC108273233	nck1	ENSIPUP00000017982	ENSIPUP00000001267	Cytoplasmic protein NCK2-like.	Cytoplasmic protein.	0.907
LOC108273233	nck2	ENSIPUP00000017982	ENSIPUP00000007215	Cytoplasmic protein NCK2-like.	Cytoplasmic protein.	0.902
LOC108277943	LOC108255881	ENSIPUP00000021001	ENSIPUP00000030508	Inositol polyphosphate 5-phosphatase K-like isoform X1.	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like isoform X1.	0.903
bax	LOC108270970	ENSIPUP00000022942	ENSIPUP00000021392	Apoptosis regulator BAX.	Apoptosis regulator BAX-like.	0.892
nck1	LOC108273233	ENSIPUP00000001267	ENSIPUP00000017982	Cytoplasmic protein.	Cytoplasmic protein NCK2-like.	0.907
nck1	nck2	ENSIPUP00000001267	ENSIPUP00000007215	Cytoplasmic protein.	Cytoplasmic protein.	0.907
nck2	LOC108273233	ENSIPUP00000007215	ENSIPUP00000017982	Cytoplasmic protein.	Cytoplasmic protein NCK2-like.	0.902
nck2	nck1	ENSIPUP00000007215	ENSIPUP00000001267	Cytoplasmic protein.	Cytoplasmic protein.	0.907