9 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atg3	Autophagy-related protein 3. (313 aa)
	dnm1l	Dynamin-1-like protein isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (728 aa)
	bnip3	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3. (197 aa)
	LOC108265374	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (671 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (751 aa)
	BAX	BCL2 associated X, apoptosis regulator. (176 aa)
	bax	Apoptosis regulator BAX. (189 aa)
	LOC108274750	Apoptosis regulator BAX-like. (199 aa)
	ENSIPUP00000025403	annotation not available (128 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108265374	dnm1l	ENSIPUP00000010565	ENSIPUP00000008895	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-1-like protein isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
LOC108265374	vps35	ENSIPUP00000010565	ENSIPUP00000021948	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.429
atg3	bnip3	ENSIPUP00000005790	ENSIPUP00000009407	Autophagy-related protein 3.	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3.	0.410
bnip3	atg3	ENSIPUP00000009407	ENSIPUP00000005790	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3.	Autophagy-related protein 3.	0.410
dnm1l	LOC108265374	ENSIPUP00000008895	ENSIPUP00000010565	Dynamin-1-like protein isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.901
dnm1l	vps35	ENSIPUP00000008895	ENSIPUP00000021948	Dynamin-1-like protein isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.429
vps35	LOC108265374	ENSIPUP00000021948	ENSIPUP00000010565	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Dynamin-1-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.429
vps35	dnm1l	ENSIPUP00000021948	ENSIPUP00000008895	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Dynamin-1-like protein isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.429