15 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108275777	Neural cell adhesion molecule L1.1-like isoform X1. (1290 aa)
	LOC108255324	Reticulon-4 receptor-like. (469 aa)
	flrt3	Leucine-rich repeat Transmembrane protein FLRT3. (676 aa)
	dcc	Netrin receptor DCC isoform X2. (1435 aa)
	LOC108271025	Neogenin-like isoform X6. (1422 aa)
	myo9a	Unconventional myosin-IXa isoform X2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2513 aa)
	LOC108274707	Unconventional myosin-IXa-like isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2465 aa)
	shtn1	Shootin-1. (540 aa)
	LOC108275206	Neogenin-like isoform X3. (1422 aa)
	l1cam	Neural cell adhesion molecule L1 isoform X1. (1280 aa)
	c9orf72	Protein C9orf72 homolog. (462 aa)
	LOC108269404	Neuronal membrane glycoprotein M6-a-like. (278 aa)
	gpm6a	Neuronal membrane glycoprotein M6-a isoform X1. (277 aa)
	LOC108268502	Shootin-1-like isoform X2. (359 aa)
	ENSIPUP00000001839	annotation not available (67 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000001839	LOC108275777	ENSIPUP00000001839	ENSIPUP00000021386	annotation not available	Neural cell adhesion molecule L1.1-like isoform X1.	0.491
ENSIPUP00000001839	l1cam	ENSIPUP00000001839	ENSIPUP00000014129	annotation not available	Neural cell adhesion molecule L1 isoform X1.	0.491
LOC108271025	LOC108275206	ENSIPUP00000020650	ENSIPUP00000016238	Neogenin-like isoform X6.	Neogenin-like isoform X3.	0.901
LOC108275206	LOC108271025	ENSIPUP00000016238	ENSIPUP00000020650	Neogenin-like isoform X3.	Neogenin-like isoform X6.	0.901
LOC108275777	ENSIPUP00000001839	ENSIPUP00000021386	ENSIPUP00000001839	Neural cell adhesion molecule L1.1-like isoform X1.	annotation not available	0.491
LOC108275777	l1cam	ENSIPUP00000021386	ENSIPUP00000014129	Neural cell adhesion molecule L1.1-like isoform X1.	Neural cell adhesion molecule L1 isoform X1.	0.906
l1cam	ENSIPUP00000001839	ENSIPUP00000014129	ENSIPUP00000001839	Neural cell adhesion molecule L1 isoform X1.	annotation not available	0.491
l1cam	LOC108275777	ENSIPUP00000014129	ENSIPUP00000021386	Neural cell adhesion molecule L1 isoform X1.	Neural cell adhesion molecule L1.1-like isoform X1.	0.906