125 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108280911	Fizzy-related protein homolog isoform X1. (495 aa)
	LOC108267527	Protein zyg-11 homolog isoform X1. (471 aa)
	gsk3a	Glycogen synthase kinase-3 alpha isoform X1; Belongs to the protein kinase superfamily. (440 aa)
	usp5	Ubiquitin carboxyl-terminal hydrolase. (858 aa)
	arih2	RBR-type E3 ubiquitin transferase. (501 aa)
	LOC108260308	Disabled homolog 2-like isoform X2. (602 aa)
	dda1	DET1- and DDB1-associated protein 1. (107 aa)
	apc2	Adenomatous polyposis coli protein 2. (2087 aa)
	sirt2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (383 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (513 aa)
	plk2	Serine/threonine-protein kinase PLK. (659 aa)
	SOCS5	Suppressor of cytokine signaling 5-like. (507 aa)
	psmc4	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (412 aa)
	sh3rf1	E3 ubiquitin-protein ligase SH3RF1. (872 aa)
	det1	DET1 homolog. (553 aa)
	ankib1	RBR-type E3 ubiquitin transferase. (1098 aa)
	LOC108263298	Suppressor of cytokine signaling 5-like isoform X1. (577 aa)
	LOC108270647	VIP peptides-like. (190 aa)
	LOC108275125	Putative E3 ubiquitin-protein ligase SH3RF2 isoform X2. (87 aa)
	rnf19a	RBR-type E3 ubiquitin transferase. (831 aa)
	LOC108268046	Fizzy-related protein homolog. (486 aa)
	LOC108255292	Axin-2-like. (790 aa)
	prkn	Parkin RBR E3 ubiquitin protein ligase. (330 aa)
	LOC108256616	Kelch-like protein 40B. (614 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (464 aa)
	mkrn2	Probable E3 ubiquitin-protein ligase makorin-2 isoform X2. (416 aa)
	ENSIPUP00000017165	annotation not available (74 aa)
	vgll4	Transcription cofactor vestigial-like protein 4 isoform X1. (268 aa)
	zyg11b	Protein zyg-11 homolog B. (739 aa)
	LOC108274016	Casein kinase I isoform delta-B; Belongs to the protein kinase superfamily. (424 aa)
	KCNE2	Potassium voltage-gated channel subfamily E member 2-like. (124 aa)
	dab2	Disabled homolog 2 isoform X1. (716 aa)
	sorl1	Sortilin-related receptor isoform X1. (2208 aa)
	ENSIPUP00000018803	annotation not available (129 aa)
	LOC108272952	Tribbles homolog 1-like. (350 aa)
	tmtc3	Transmembrane and TPR repeat-containing protein 3. (915 aa)
	sh3d19	SH3 domain-containing protein 19 isoform X2. (133 aa)
	il1b	Interleukin-1. (280 aa)
	pcsk9	Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family. (651 aa)
	ENSIPUP00000020164	annotation not available (180 aa)
	il1b-2	Interleukin-1. (280 aa)
	tmem259	Membralin isoform X2. (650 aa)
	LOC108269231	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (180 aa)
	fzr1	Fizzy-related protein homolog isoform X1. (496 aa)
	LOC108275215	LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 2-like. (167 aa)
	cdc20	Cell division cycle protein 20 homolog. (538 aa)
	LOC108268052	Nardilysin-like isoform X1; Belongs to the peptidase M16 family. (1097 aa)
	fmr1	Fragile X mental retardation protein 1 isoform X1. (570 aa)
	vps35	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (751 aa)
	vps28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	LOC108259482	Casein kinase I isoform X2; Belongs to the protein kinase superfamily. (411 aa)
	axin2	Axin-2 isoform X1. (815 aa)
	LOC108277216	Serine/threonine-protein kinase PLK. (660 aa)
	LOC108258646	Glycogen synthase kinase-3 beta-like isoform X1; Belongs to the protein kinase superfamily. (422 aa)
	gclc	Glutamate--cysteine ligase catalytic subunit. (631 aa)
	sh3rf3	SH3 domain-containing RING finger protein 3. (754 aa)
	LOC108257871	RBR-type E3 ubiquitin transferase. (632 aa)
	rhbdd3	Rhomboid domain-containing protein 3. (357 aa)
	bag2	BAG family molecular chaperone regulator 2. (209 aa)
	tnfaip3	Tumor necrosis factor alpha-induced protein 3. (764 aa)
	bbs7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (715 aa)
	oaz1	LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 1. (206 aa)
	zer1	Protein zer-1 homolog. (768 aa)
	psmc5	26S protease regulatory subunit 8 isoform X1; Belongs to the AAA ATPase family. (406 aa)
	LOC108270676	RBR-type E3 ubiquitin transferase. (528 aa)
	LOC108276354	Transcription cofactor vestigial-like protein 4. (267 aa)
	LOC108268912	Syntaxin-5-like; Belongs to the syntaxin family. (302 aa)
	psmd10	26S proteasome non-ATPase regulatory subunit 10. (226 aa)
	LOC108260232	Vesicle-fusing ATPase isoform X1. (772 aa)
	LOC108276018	SH3 domain-containing protein 19-like. (836 aa)
	psmc1	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (440 aa)
	plk1	Serine/threonine-protein kinase PLK. (591 aa)
	rhbdd1	Rhomboid-related protein 4 isoform X1. (328 aa)
	LOC108273445	Casein kinase I-like isoform X2; Belongs to the protein kinase superfamily. (418 aa)
	asb5	Ankyrin repeat and SOCS box protein 5 isoform X1. (329 aa)
	psmc3	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (427 aa)
	LOC108267491	E3 ubiquitin-protein ligase RNF19B-like. (264 aa)
	LOC108267494	Uncharacterized protein LOC108267494. (264 aa)
	LOC108279393	LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 2-like. (211 aa)
	LOC108280764	Kelch-like protein 40A. (612 aa)
	LOC108273757	Vesicle-fusing ATPase-like. (747 aa)
	clul1	Clusterin; Belongs to the clusterin family. (462 aa)
	LOC108255052	Tumor necrosis factor receptor superfamily member 1B-like. (418 aa)
	LOC108276113	E3 ubiquitin-protein ligase. (863 aa)
	LOC108269670	Tribbles homolog 2-like. (289 aa)
	rnf180	E3 ubiquitin-protein ligase RNF180 isoform X2. (471 aa)
	fbxo22	F-box only protein 22. (344 aa)
	rnf217	RBR-type E3 ubiquitin transferase. (556 aa)
	ddb1	DNA damage-binding protein 1. (1140 aa)
	sirt6	NAD-dependent protein deacetylase sirtuin-6 isoform X1. (386 aa)
	psmc6	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (371 aa)
	clu	Clusterin; Belongs to the clusterin family. (442 aa)
	apc	Adenomatous polyposis coli protein isoform X1. (2760 aa)
	cop1	E3 ubiquitin-protein ligase RFWD2 isoform X1. (692 aa)
	plk3	Serine/threonine-protein kinase PLK. (662 aa)
	LOC108262931	VIP peptides-like. (120 aa)
	axin1	Axin-1 isoform X1. (806 aa)
	trib2	Tribbles homolog 2 isoform X1. (346 aa)
	rnft1	RING finger and transmembrane domain-containing protein 1. (412 aa)
	fbxw8	F-box/WD repeat-containing protein 8. (653 aa)
	rnft2	RING finger and transmembrane domain-containing protein 2. (443 aa)
	mapk9	Mitogen-activated protein kinase. (421 aa)
	trim32	E3 ubiquitin-protein ligase TRIM32. (674 aa)
	snx9	Sorting nexin. (607 aa)
	LOC108264557	RBR-type E3 ubiquitin transferase. (525 aa)
	LOC108279139	Syntaxin-5-like. (347 aa)
	gga3	LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3. (148 aa)
	LOC108268397	Glypican-3-like isoform X1; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (583 aa)
	rnf19b	RBR-type E3 ubiquitin transferase. (691 aa)
	LOC108256380	RBR-type E3 ubiquitin transferase. (303 aa)
	lrrk2	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X1. (2455 aa)
	hspbp1	Hsp70-binding protein 1. (326 aa)
	ier3	Radiation-inducible immediate-early gene IEX-1. (130 aa)
	rilp	Rab-interacting lysosomal protein isoform X2. (412 aa)
	ENSIPUP00000034832	annotation not available (250 aa)
	rchy1	RING finger and CHY zinc finger domain-containing protein 1. (240 aa)
	rnf144a	RBR-type E3 ubiquitin transferase. (293 aa)
	LOC108266553	Ankyrin repeat and SOCS box protein 11-like isoform X1. (306 aa)
	gsk3b	Glycogen synthase kinase-3 beta isoform X2; Belongs to the protein kinase superfamily. (421 aa)
	psmc2	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (433 aa)
	LOC108271999	E3 ubiquitin-protein ligase. (847 aa)
	LOC108271334	NEDD8 ultimate buster 1-like. (598 aa)
	LOC108271341	NEDD8 ultimate buster 1-like. (575 aa)
	LOC108254833	Tribbles homolog 2-like. (348 aa)
	LOC108271269	Nardilysin-like; Belongs to the peptidase M16 family. (1093 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000017165	sh3rf3	ENSIPUP00000017165	ENSIPUP00000023372	annotation not available	SH3 domain-containing RING finger protein 3.	0.487
ENSIPUP00000018803	LOC108258646	ENSIPUP00000018803	ENSIPUP00000022541	annotation not available	Glycogen synthase kinase-3 beta-like isoform X1; Belongs to the protein kinase superfamily.	0.827
ENSIPUP00000018803	LOC108259482	ENSIPUP00000018803	ENSIPUP00000022075	annotation not available	Casein kinase I isoform X2; Belongs to the protein kinase superfamily.	0.534
ENSIPUP00000018803	LOC108273445	ENSIPUP00000018803	ENSIPUP00000002130	annotation not available	Casein kinase I-like isoform X2; Belongs to the protein kinase superfamily.	0.544
ENSIPUP00000018803	LOC108274016	ENSIPUP00000018803	ENSIPUP00000017595	annotation not available	Casein kinase I isoform delta-B; Belongs to the protein kinase superfamily.	0.534
ENSIPUP00000018803	apc	ENSIPUP00000018803	ENSIPUP00000008487	annotation not available	Adenomatous polyposis coli protein isoform X1.	0.866
ENSIPUP00000018803	apc2	ENSIPUP00000018803	ENSIPUP00000011279	annotation not available	Adenomatous polyposis coli protein 2.	0.823
ENSIPUP00000018803	gsk3a	ENSIPUP00000018803	ENSIPUP00000008744	annotation not available	Glycogen synthase kinase-3 alpha isoform X1; Belongs to the protein kinase superfamily.	0.848
ENSIPUP00000018803	gsk3b	ENSIPUP00000018803	ENSIPUP00000035615	annotation not available	Glycogen synthase kinase-3 beta isoform X2; Belongs to the protein kinase superfamily.	0.827
ENSIPUP00000018803	psmc1	ENSIPUP00000018803	ENSIPUP00000001351	annotation not available	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.419
ENSIPUP00000018803	psmc2	ENSIPUP00000018803	ENSIPUP00000036055	annotation not available	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.411
ENSIPUP00000018803	psmc5	ENSIPUP00000018803	ENSIPUP00000025847	annotation not available	26S protease regulatory subunit 8 isoform X1; Belongs to the AAA ATPase family.	0.409
ENSIPUP00000018803	psmc6	ENSIPUP00000018803	ENSIPUP00000026532	annotation not available	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.408
ENSIPUP00000020164	LOC108255052	ENSIPUP00000020164	ENSIPUP00000005601	annotation not available	Tumor necrosis factor receptor superfamily member 1B-like.	0.431
ENSIPUP00000020164	mapk9	ENSIPUP00000020164	ENSIPUP00000029681	annotation not available	Mitogen-activated protein kinase.	0.429
KCNE2	LOC108269231	ENSIPUP00000017791	ENSIPUP00000020352	Potassium voltage-gated channel subfamily E member 2-like.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.446
LOC108254833	cop1	ENSIPUP00000036712	ENSIPUP00000026706	Tribbles homolog 2-like.	E3 ubiquitin-protein ligase RFWD2 isoform X1.	0.798
LOC108255052	ENSIPUP00000020164	ENSIPUP00000005601	ENSIPUP00000020164	Tumor necrosis factor receptor superfamily member 1B-like.	annotation not available	0.431
LOC108255052	il1b	ENSIPUP00000005601	ENSIPUP00000020116	Tumor necrosis factor receptor superfamily member 1B-like.	Interleukin-1.	0.431
LOC108255052	il1b-2	ENSIPUP00000005601	ENSIPUP00000020252	Tumor necrosis factor receptor superfamily member 1B-like.	Interleukin-1.	0.431