15 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rb1	Retinoblastoma-associated protein. (902 aa)
	cdt1	DNA replication factor Cdt1. (672 aa)
	cdc16	Cell division cycle protein 16 homolog isoform X1. (611 aa)
	anapc11	Anaphase-promoting complex subunit 11 isoform X1. (88 aa)
	anapc5	Anaphase-promoting complex subunit 5. (767 aa)
	cdc27	Cell division cycle protein 27 homolog isoform X1. (834 aa)
	mad2l1bp	MAD2L1-binding protein. (362 aa)
	LOC108280845	Cullin-3-like isoform X1; Belongs to the cullin family. (258 aa)
	anapc7	Anaphase-promoting complex subunit 7. (565 aa)
	LOC108261246	Cullin-3. (670 aa)
	cul3	Cullin-3 isoform X1; Belongs to the cullin family. (773 aa)
	cdc23	Cell division cycle protein 23 homolog. (585 aa)
	nsmce2	E3 SUMO-protein ligase NSE2 isoform X1. (238 aa)
	ENSIPUP00000002499	annotation not available (78 aa)
	ENSIPUP00000002488	annotation not available (80 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000002488	anapc11	ENSIPUP00000002488	ENSIPUP00000033404	annotation not available	Anaphase-promoting complex subunit 11 isoform X1.	0.946
ENSIPUP00000002488	anapc7	ENSIPUP00000002488	ENSIPUP00000013945	annotation not available	Anaphase-promoting complex subunit 7.	0.949
ENSIPUP00000002488	cdc16	ENSIPUP00000002488	ENSIPUP00000034952	annotation not available	Cell division cycle protein 16 homolog isoform X1.	0.948
ENSIPUP00000002488	cdc23	ENSIPUP00000002488	ENSIPUP00000003694	annotation not available	Cell division cycle protein 23 homolog.	0.951
ENSIPUP00000002488	cdc27	ENSIPUP00000002488	ENSIPUP00000028379	annotation not available	Cell division cycle protein 27 homolog isoform X1.	0.948
ENSIPUP00000002488	cdt1	ENSIPUP00000002488	ENSIPUP00000035167	annotation not available	DNA replication factor Cdt1.	0.509
ENSIPUP00000002499	anapc11	ENSIPUP00000002499	ENSIPUP00000033404	annotation not available	Anaphase-promoting complex subunit 11 isoform X1.	0.946
ENSIPUP00000002499	anapc7	ENSIPUP00000002499	ENSIPUP00000013945	annotation not available	Anaphase-promoting complex subunit 7.	0.949
ENSIPUP00000002499	cdc16	ENSIPUP00000002499	ENSIPUP00000034952	annotation not available	Cell division cycle protein 16 homolog isoform X1.	0.948
ENSIPUP00000002499	cdc23	ENSIPUP00000002499	ENSIPUP00000003694	annotation not available	Cell division cycle protein 23 homolog.	0.951
ENSIPUP00000002499	cdc27	ENSIPUP00000002499	ENSIPUP00000028379	annotation not available	Cell division cycle protein 27 homolog isoform X1.	0.948
ENSIPUP00000002499	cdt1	ENSIPUP00000002499	ENSIPUP00000035167	annotation not available	DNA replication factor Cdt1.	0.509
LOC108261246	cdt1	ENSIPUP00000009579	ENSIPUP00000035167	Cullin-3.	DNA replication factor Cdt1.	0.411
LOC108261246	rb1	ENSIPUP00000009579	ENSIPUP00000001212	Cullin-3.	Retinoblastoma-associated protein.	0.515
LOC108280845	cdt1	ENSIPUP00000014709	ENSIPUP00000035167	Cullin-3-like isoform X1; Belongs to the cullin family.	DNA replication factor Cdt1.	0.411
LOC108280845	rb1	ENSIPUP00000014709	ENSIPUP00000001212	Cullin-3-like isoform X1; Belongs to the cullin family.	Retinoblastoma-associated protein.	0.515
anapc11	ENSIPUP00000002488	ENSIPUP00000033404	ENSIPUP00000002488	Anaphase-promoting complex subunit 11 isoform X1.	annotation not available	0.946
anapc11	ENSIPUP00000002499	ENSIPUP00000033404	ENSIPUP00000002499	Anaphase-promoting complex subunit 11 isoform X1.	annotation not available	0.946
anapc11	anapc5	ENSIPUP00000033404	ENSIPUP00000032141	Anaphase-promoting complex subunit 11 isoform X1.	Anaphase-promoting complex subunit 5.	0.964
anapc11	anapc7	ENSIPUP00000033404	ENSIPUP00000013945	Anaphase-promoting complex subunit 11 isoform X1.	Anaphase-promoting complex subunit 7.	0.922