51 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (470 aa)
	ENSIPUP00000000640	annotation not available (209 aa)
	kdm6b	Lysine-specific demethylase 6B. (1950 aa)
	nox4	NADPH oxidase 4 isoform X1. (539 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	LOC108264167	Bone morphogenetic protein 2-like. (420 aa)
	LOC108270435	Bone morphogenetic protein 2-like. (392 aa)
	mef2a	Myocyte-specific enhancer factor 2A isoform X1. (517 aa)
	LOC108274195	Dual specificity mitogen-activated protein kinase kinase 4-like isoform X1; Belongs to the protein kinase superfamily. (425 aa)
	bmp4	Bone morphogenetic protein 4. (402 aa)
	LOC108273895	Cytochrome P450 26A1; Belongs to the cytochrome P450 family. (492 aa)
	LOC108270465	Ankyrin repeat and SOCS box protein 2-like isoform X2. (588 aa)
	acadm	Medium-chain specific Acyl-CoA dehydrogenase, mitochondrial. (419 aa)
	LOC108280602	T-box transcription factor TBX1-A-like isoform X1. (303 aa)
	nkx2-6	Homeobox protein Nkx-2.6. (296 aa)
	LOC108268597	Uncharacterized protein LOC108268597. (253 aa)
	isl1	Insulin gene enhancer protein ISL-1 isoform X1. (413 aa)
	lrrc10b	Leucine-rich repeat-containing protein 10B. (386 aa)
	LOC108280745	Von Willebrand factor A domain-containing protein 5B1-like isoform X2. (1300 aa)
	nkx2-5	Homeobox protein Nkx-2.5. (308 aa)
	adprhl1	Protein ADP-ribosylarginine hydrolase-like protein 1. (371 aa)
	maml1	Mastermind-like protein 1 isoform X1. (1018 aa)
	LOC108279310	Hamartin-like. (1195 aa)
	mef2c	Myocyte-specific enhancer factor 2C isoform X1. (479 aa)
	LOC108270415	Gremlin-2-like. (195 aa)
	mylk3	Myosin light chain kinase 3 isoform X1. (802 aa)
	tbx5	T-box transcription factor TBX5-A. (517 aa)
	nrap	Nebulin-related-anchoring protein isoform X1. (1829 aa)
	irx3	Iroquois-class homeodomain protein IRX-3. (441 aa)
	tbx1	T-box transcription factor TBX1 isoform X2. (508 aa)
	sirt6	NAD-dependent protein deacetylase sirtuin-6 isoform X1. (386 aa)
	asb2	Ankyrin repeat and SOCS box protein 2 isoform X3. (691 aa)
	lrrc10	Leucine-rich repeat-containing protein 10. (288 aa)
	LOC108258099	Ankyrin repeat and SOCS box protein 2-like isoform X1. (662 aa)
	ENSIPUP00000027552	annotation not available (161 aa)
	LOC108277160	Lysine-specific demethylase 6B-like isoform X2. (1684 aa)
	srf	Serum response factor isoform X3. (599 aa)
	LOC108258023	Bone morphogenetic protein 2-like. (410 aa)
	LOC108255875	Hamartin-like isoform X1. (1121 aa)
	neb	Nebulin isoform X1. (6116 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2525 aa)
	LOC108271125	Myocyte-specific enhancer factor 2A-like isoform X1. (441 aa)
	LOC108270618	Mesoderm posterior protein 1-like. (257 aa)
	map2k4	Dual specificity mitogen-activated protein kinase kinase 4 isoform X2; Belongs to the protein kinase superfamily. (420 aa)
	opa1	Dynamin-like 120 kDa protein, mitochondrial isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (986 aa)
	LOC108275042	Iroquois-class homeodomain protein irx-3-like. (337 aa)
	LOC108270922	Serum response factor-like isoform X1. (442 aa)
	grem1	Gremlin-1 isoform X2. (176 aa)
	LOC108261065	Telethonin-like. (179 aa)
	LOC108262899	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (197 aa)
	LOC108277114	Insulin gene enhancer protein isl-2b-like. (355 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255875	LOC108277160	ENSIPUP00000030642	ENSIPUP00000028339	Hamartin-like isoform X1.	Lysine-specific demethylase 6B-like isoform X2.	0.730
LOC108255875	LOC108279310	ENSIPUP00000030642	ENSIPUP00000018755	Hamartin-like isoform X1.	Hamartin-like.	0.903
LOC108255875	kdm6b	ENSIPUP00000030642	ENSIPUP00000000664	Hamartin-like isoform X1.	Lysine-specific demethylase 6B.	0.730
LOC108255875	mtor	ENSIPUP00000030642	ENSIPUP00000032852	Hamartin-like isoform X1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.896
LOC108258023	LOC108270415	ENSIPUP00000028724	ENSIPUP00000021542	Bone morphogenetic protein 2-like.	Gremlin-2-like.	0.753
LOC108258023	grem1	ENSIPUP00000028724	ENSIPUP00000035064	Bone morphogenetic protein 2-like.	Gremlin-1 isoform X2.	0.753
LOC108261065	neb	ENSIPUP00000036085	ENSIPUP00000032233	Telethonin-like.	Nebulin isoform X1.	0.609
LOC108261065	nrap	ENSIPUP00000036085	ENSIPUP00000024910	Telethonin-like.	Nebulin-related-anchoring protein isoform X1.	0.552
LOC108262899	LOC108273895	ENSIPUP00000036329	ENSIPUP00000010092	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.422
LOC108262899	bmp4	ENSIPUP00000036329	ENSIPUP00000008975	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Bone morphogenetic protein 4.	0.543
LOC108262899	nkx2-5	ENSIPUP00000036329	ENSIPUP00000015162	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Homeobox protein Nkx-2.5.	0.422
LOC108264167	LOC108270415	ENSIPUP00000005898	ENSIPUP00000021542	Bone morphogenetic protein 2-like.	Gremlin-2-like.	0.753
LOC108264167	grem1	ENSIPUP00000005898	ENSIPUP00000035064	Bone morphogenetic protein 2-like.	Gremlin-1 isoform X2.	0.753
LOC108270415	LOC108258023	ENSIPUP00000021542	ENSIPUP00000028724	Gremlin-2-like.	Bone morphogenetic protein 2-like.	0.753
LOC108270415	LOC108264167	ENSIPUP00000021542	ENSIPUP00000005898	Gremlin-2-like.	Bone morphogenetic protein 2-like.	0.753
LOC108270415	LOC108270435	ENSIPUP00000021542	ENSIPUP00000006716	Gremlin-2-like.	Bone morphogenetic protein 2-like.	0.753
LOC108270415	bmp4	ENSIPUP00000021542	ENSIPUP00000008975	Gremlin-2-like.	Bone morphogenetic protein 4.	0.753
LOC108270435	LOC108270415	ENSIPUP00000006716	ENSIPUP00000021542	Bone morphogenetic protein 2-like.	Gremlin-2-like.	0.753
LOC108270435	grem1	ENSIPUP00000006716	ENSIPUP00000035064	Bone morphogenetic protein 2-like.	Gremlin-1 isoform X2.	0.753
LOC108270922	LOC108275042	ENSIPUP00000034896	ENSIPUP00000034220	Serum response factor-like isoform X1.	Iroquois-class homeodomain protein irx-3-like.	0.405