48 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rb1cc1	RB1-inducible coiled-coil protein 1 isoform X1. (1593 aa)
	pink1	Serine/threonine-protein kinase PINK1, mitochondrial. (564 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (520 aa)
	ufl1	E3 UFM1-protein ligase 1. (779 aa)
	atg14	Beclin 1-associated autophagy-related key regulator. (513 aa)
	ENSIPUP00000002531	annotation not available (94 aa)
	uba5	Ubiquitin-like modifier-activating enzyme 5. (401 aa)
	retreg1	Reticulophagy receptor FAM134B isoform X2. (331 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	wdr81	WD repeat-containing protein 81. (2071 aa)
	LOC108265551	Serine/threonine-protein kinase ULK1-like isoform X2. (915 aa)
	LOC108271158	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1. (531 aa)
	retreg2	Protein FAM134A isoform X2. (516 aa)
	LOC108273713	E3 ubiquitin-protein ligase rnf213-beta-like. (3325 aa)
	rab7a	Ras-related protein Rab-7a. (205 aa)
	ulk2	Serine/threonine-protein kinase ULK2 isoform X1. (1034 aa)
	nod1	Nucleotide-binding oligomerization domain-containing protein 1. (946 aa)
	ENSIPUP00000012886	annotation not available (91 aa)
	wdfy3	WD repeat and FYVE domain-containing protein 3 isoform X4. (3467 aa)
	ripk2	Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. (579 aa)
	snx7	Sorting nexin-7 isoform X1. (463 aa)
	ambra1	Activating molecule in BECN1-regulated autophagy protein 1 isoform X3. (1371 aa)
	ulk1	Serine/threonine-protein kinase ULK1 isoform X1. (997 aa)
	prkn	Parkin RBR E3 ubiquitin protein ligase. (330 aa)
	ufm1	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes. (90 aa)
	sting1	Stimulator of Interferon genes protein. (395 aa)
	phb2	Prohibitin. (303 aa)
	retreg3	Protein FAM134C. (490 aa)
	sqstm1	Sequestosome-1. (460 aa)
	atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (415 aa)
	nod2	Nucleotide-binding oligomerization domain-containing protein 2. (981 aa)
	ogt	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2. (1052 aa)
	LOC108271868	Ras-related protein Rab-7a-like. (207 aa)
	taz	Tafazzin family protein; Belongs to the taffazin family. (262 aa)
	gsap	Gamma-secretase-activating protein. (877 aa)
	pjvk	Pejvakin. (353 aa)
	LOC108271919	Testis-expressed sequence 264 protein-like. (318 aa)
	DDRGK1	DDRGK domain containing 1. (267 aa)
	c5h5orf51	UPF0600 protein C5orf51 homolog. (279 aa)
	atg2a	Autophagy-related protein 2 homolog A. (2012 aa)
	TEX264	Testis-expressed sequence 264 protein-like. (312 aa)
	LOC108272987	Uncharacterized protein LOC108272987. (2000 aa)
	map1lc3c	Microtubule-associated proteins 1A/1B light chain 3C isoform X2. (136 aa)
	stbd1	Starch binding domain 1. (258 aa)
	LOC108254780	Ras-related protein Rab-7a. (207 aa)
	LOC108261706	Uncharacterized protein LOC108261706. (2221 aa)
	ATG2B	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B. (1987 aa)
	snx30	Sorting nexin-30. (435 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	LOC108265551	ENSIPUP00000035750	ENSIPUP00000006527	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Serine/threonine-protein kinase ULK1-like isoform X2.	0.980
ATG2B	atg13	ENSIPUP00000035750	ENSIPUP00000001834	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.547
ATG2B	atg14	ENSIPUP00000035750	ENSIPUP00000002518	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Beclin 1-associated autophagy-related key regulator.	0.497
ATG2B	atg2a	ENSIPUP00000035750	ENSIPUP00000029503	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Autophagy-related protein 2 homolog A.	0.909
ATG2B	atg4b	ENSIPUP00000035750	ENSIPUP00000020140	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.416
ATG2B	atg5	ENSIPUP00000035750	ENSIPUP00000004982	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.551
ATG2B	rb1cc1	ENSIPUP00000035750	ENSIPUP00000000155	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	RB1-inducible coiled-coil protein 1 isoform X1.	0.591
ATG2B	ulk1	ENSIPUP00000035750	ENSIPUP00000015422	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Serine/threonine-protein kinase ULK1 isoform X1.	0.980
ATG2B	ulk2	ENSIPUP00000035750	ENSIPUP00000011760	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	Serine/threonine-protein kinase ULK2 isoform X1.	0.980
DDRGK1	uba5	ENSIPUP00000027885	ENSIPUP00000002568	DDRGK domain containing 1.	Ubiquitin-like modifier-activating enzyme 5.	0.596
DDRGK1	ufl1	ENSIPUP00000027885	ENSIPUP00000002333	DDRGK domain containing 1.	E3 UFM1-protein ligase 1.	0.950
DDRGK1	ufm1	ENSIPUP00000027885	ENSIPUP00000016482	DDRGK domain containing 1.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.763
ENSIPUP00000012886	atg5	ENSIPUP00000012886	ENSIPUP00000004982	annotation not available	Autophagy protein 5; Involved in autophagic vesicle formation.	0.418
ENSIPUP00000012886	pink1	ENSIPUP00000012886	ENSIPUP00000000781	annotation not available	Serine/threonine-protein kinase PINK1, mitochondrial.	0.511
ENSIPUP00000012886	prkn	ENSIPUP00000012886	ENSIPUP00000016182	annotation not available	Parkin RBR E3 ubiquitin protein ligase.	0.451
LOC108254780	LOC108271868	ENSIPUP00000033400	ENSIPUP00000025443	Ras-related protein Rab-7a.	Ras-related protein Rab-7a-like.	0.900
LOC108254780	rab7a	ENSIPUP00000033400	ENSIPUP00000010696	Ras-related protein Rab-7a.	Ras-related protein Rab-7a.	0.900
LOC108261706	LOC108271158	ENSIPUP00000033497	ENSIPUP00000007939	Uncharacterized protein LOC108261706.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1.	0.765
LOC108261706	ripk2	ENSIPUP00000033497	ENSIPUP00000013628	Uncharacterized protein LOC108261706.	Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains.	0.773
LOC108265551	ATG2B	ENSIPUP00000006527	ENSIPUP00000035750	Serine/threonine-protein kinase ULK1-like isoform X2.	LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B.	0.980