(40 nodes) Regulation of protein processing network (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ift52	Intraflagellar transport protein 52 homolog isoform X3. (436 aa)
	fgf2	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (151 aa)
	rhbdd1	Rhomboid-related protein 4 isoform X1. (328 aa)
	prkacb	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily. (394 aa)
	s10a1	Protein S100; Belongs to the S-100 family. (98 aa)
	LOC108277904	Alpha-2-antiplasmin-like isoform X2; Belongs to the serpin family. (475 aa)
	LOC108266111	Interleukin-1 receptor type 2-like. (435 aa)
	serpine1	Plasminogen activator inhibitor 1; Belongs to the serpin family. (417 aa)
	spon1	Spondin-1. (805 aa)
	LOC108260269	Growth arrest-specific protein 1-like. (283 aa)
	lpcat3	Lysophospholipid acyltransferase 5; Belongs to the membrane-bound acyltransferase family. (465 aa)
	hpn	Serine protease hepsin; Belongs to the peptidase S1 family. (430 aa)
	rnf139	E3 ubiquitin-protein ligase RNF139. (673 aa)
	bcl2l12	Bcl-2-like protein 12 isoform X1. (411 aa)
	kapca	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily. (394 aa)
	s10aa	Protein S100; Belongs to the S-100 family. (101 aa)
	glg1	Golgi apparatus protein 1. (1150 aa)
	prkaca	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily. (351 aa)
	LOC108278879	Alpha-2-antiplasmin-like; Belongs to the serpin family. (450 aa)
	LOC108264330	Growth arrest-specific protein 1-like. (262 aa)
	LOC108269023	Spondin-1-like isoform X1. (794 aa)
	ctsz	Cathepsin Z isoform X2; Belongs to the peptidase C1 family. (291 aa)
	cast	Calpastatin isoform X1. (1045 aa)
	LOC108267323	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily. (351 aa)
	LOC108256043	Growth arrest-specific protein 1-like. (267 aa)
	LOC108263311	cystatin-F-like. (144 aa)
	tmem98	Transmembrane protein 98. (220 aa)
	bag2	BAG family molecular chaperone regulator 2. (209 aa)
	cln3	Battenin. (437 aa)
	ENSIPUP00000024431	annotation not available (289 aa)
	LOC108274991	Golgi apparatus protein 1-like isoform X1. (1170 aa)
	LOC108280169	Cathepsin Z-like; Belongs to the peptidase C1 family. (329 aa)
	plgrkt	Plasminogen receptor (KT). (149 aa)
	serpine2	Glia-derived nexin; Belongs to the serpin family. (411 aa)
	chac1	Gamma-glutamylcyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (168 aa)
	LOC108267993	Protein phosphatase 1 regulatory subunit 15B-like. (373 aa)
	clec3b	Tetranectin isoform X1. (209 aa)
	lrrk2	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X1. (2455 aa)
	ldlrad3	Low-density lipoprotein receptor class A domain-containing protein 3 isoform X1. (349 aa)
	cntn2	Contactin-2. (1041 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108256043	LOC108260269	ENSIPUP00000017804	ENSIPUP00000009873	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.904
LOC108256043	LOC108264330	ENSIPUP00000017804	ENSIPUP00000015289	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.905
LOC108260269	LOC108256043	ENSIPUP00000009873	ENSIPUP00000017804	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.904
LOC108260269	LOC108264330	ENSIPUP00000009873	ENSIPUP00000015289	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.906
LOC108264330	LOC108256043	ENSIPUP00000015289	ENSIPUP00000017804	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.905
LOC108264330	LOC108260269	ENSIPUP00000015289	ENSIPUP00000009873	Growth arrest-specific protein 1-like.	Growth arrest-specific protein 1-like.	0.906
LOC108267323	kapca	ENSIPUP00000017531	ENSIPUP00000011233	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.905
LOC108267323	prkaca	ENSIPUP00000017531	ENSIPUP00000013646	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.904
LOC108267323	prkacb	ENSIPUP00000017531	ENSIPUP00000004823	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	0.900
kapca	LOC108267323	ENSIPUP00000011233	ENSIPUP00000017531	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	0.905
kapca	prkaca	ENSIPUP00000011233	ENSIPUP00000013646	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.900
kapca	prkacb	ENSIPUP00000011233	ENSIPUP00000004823	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	0.901
prkaca	LOC108267323	ENSIPUP00000013646	ENSIPUP00000017531	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	0.904
prkaca	kapca	ENSIPUP00000013646	ENSIPUP00000011233	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.900
prkaca	prkacb	ENSIPUP00000013646	ENSIPUP00000004823	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	0.900
prkacb	LOC108267323	ENSIPUP00000004823	ENSIPUP00000017531	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.	0.900
prkacb	kapca	ENSIPUP00000004823	ENSIPUP00000011233	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	Camp-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.	0.901
prkacb	prkaca	ENSIPUP00000004823	ENSIPUP00000013646	cAMP-dependent protein kinase catalytic subunit beta isoform X1; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.900
s10a1	s10aa	ENSIPUP00000005015	ENSIPUP00000011251	Protein S100; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.901
s10aa	s10a1	ENSIPUP00000011251	ENSIPUP00000005015	Protein S100; Belongs to the S-100 family.	Protein S100; Belongs to the S-100 family.	0.901