13 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bmp7	Bone morphogenetic protein 7. (425 aa)
	kiaa1324	UPF0577 protein KIAA1324 homolog. (988 aa)
	bmp4	Bone morphogenetic protein 4. (402 aa)
	bmper	BMP-binding endothelial regulator protein. (673 aa)
	LOC108264167	Bone morphogenetic protein 2-like. (420 aa)
	ENSIPUP00000007265	annotation not available (270 aa)
	LOC108264231	UPF0577 protein KIAA1324-like. (1014 aa)
	LOC108280221	Derriere protein-like. (357 aa)
	cdh5	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins. (757 aa)
	bmp5	Bone morphogenetic protein 5. (452 aa)
	LOC108279685	UPF0577 protein KIAA1324-like. (1007 aa)
	kcp	Kielin/chordin-like protein. (199 aa)
	bmp8a	Bone morphogenetic protein 8A. (459 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000007265	kcp	ENSIPUP00000007265	ENSIPUP00000007279	annotation not available	Kielin/chordin-like protein.	0.712
LOC108264167	bmp5	ENSIPUP00000005898	ENSIPUP00000023670	Bone morphogenetic protein 2-like.	Bone morphogenetic protein 5.	0.647
LOC108264167	bmp7	ENSIPUP00000005898	ENSIPUP00000035454	Bone morphogenetic protein 2-like.	Bone morphogenetic protein 7.	0.647
LOC108264167	bmper	ENSIPUP00000005898	ENSIPUP00000005270	Bone morphogenetic protein 2-like.	BMP-binding endothelial regulator protein.	0.462
bmp4	bmp5	ENSIPUP00000008975	ENSIPUP00000023670	Bone morphogenetic protein 4.	Bone morphogenetic protein 5.	0.647
bmp4	bmp7	ENSIPUP00000008975	ENSIPUP00000035454	Bone morphogenetic protein 4.	Bone morphogenetic protein 7.	0.647
bmp4	bmper	ENSIPUP00000008975	ENSIPUP00000005270	Bone morphogenetic protein 4.	BMP-binding endothelial regulator protein.	0.622
bmp5	LOC108264167	ENSIPUP00000023670	ENSIPUP00000005898	Bone morphogenetic protein 5.	Bone morphogenetic protein 2-like.	0.647
bmp5	bmp4	ENSIPUP00000023670	ENSIPUP00000008975	Bone morphogenetic protein 5.	Bone morphogenetic protein 4.	0.647
bmp5	bmper	ENSIPUP00000023670	ENSIPUP00000005270	Bone morphogenetic protein 5.	BMP-binding endothelial regulator protein.	0.496
bmp7	LOC108264167	ENSIPUP00000035454	ENSIPUP00000005898	Bone morphogenetic protein 7.	Bone morphogenetic protein 2-like.	0.647
bmp7	bmp4	ENSIPUP00000035454	ENSIPUP00000008975	Bone morphogenetic protein 7.	Bone morphogenetic protein 4.	0.647
bmp7	bmper	ENSIPUP00000035454	ENSIPUP00000005270	Bone morphogenetic protein 7.	BMP-binding endothelial regulator protein.	0.491
bmper	LOC108264167	ENSIPUP00000005270	ENSIPUP00000005898	BMP-binding endothelial regulator protein.	Bone morphogenetic protein 2-like.	0.462
bmper	bmp4	ENSIPUP00000005270	ENSIPUP00000008975	BMP-binding endothelial regulator protein.	Bone morphogenetic protein 4.	0.622
bmper	bmp5	ENSIPUP00000005270	ENSIPUP00000023670	BMP-binding endothelial regulator protein.	Bone morphogenetic protein 5.	0.496
bmper	bmp7	ENSIPUP00000005270	ENSIPUP00000035454	BMP-binding endothelial regulator protein.	Bone morphogenetic protein 7.	0.491
kcp	ENSIPUP00000007265	ENSIPUP00000007279	ENSIPUP00000007265	Kielin/chordin-like protein.	annotation not available	0.712