35 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108275399	Ribonuclease ZC3H12A-like. (623 aa)
	LOC108266760	Interleukin-1 receptor-like 2. (585 aa)
	LOC108266615	Interleukin-1 receptor-like 2. (604 aa)
	ST18	Suppression of tumorigenicity 18 protein isoform X2. (717 aa)
	ENSIPUP00000000152	annotation not available (105 aa)
	LOC108255518	C-C motif chemokine 19-like isoform X1. (115 aa)
	map2k7	Dual specificity mitogen-activated protein kinase kinase 7 isoform X1. (445 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (540 aa)
	acod1	Cis-aconitate decarboxylase. (482 aa)
	rbmx	RNA-binding motif protein, X chromosome isoform X1. (377 aa)
	LOC108270373	Ribosomal protein S6 kinase. (794 aa)
	rc3h1	Roquin-1 isoform X1. (1102 aa)
	LOC108269388	Cis-aconitate decarboxylase-like. (498 aa)
	irak3	Interleukin-1 receptor-associated kinase 3. (609 aa)
	LOC108280909	C-C motif chemokine 25-like. (106 aa)
	LOC108269742	Ankyrin repeat domain-containing protein 1-like. (242 aa)
	LOC108261059	C-C motif chemokine. (104 aa)
	LOC108276426	Tumor necrosis factor receptor superfamily member 5-like. (310 aa)
	nr1d1	Nuclear receptor subfamily 1 group D member 1 isoform X1. (672 aa)
	LOC108270067	Ribonuclease ZC3H12A-like. (605 aa)
	akap12	A-kinase anchor protein 12 isoform X1. (1597 aa)
	LOC108259002	Interleukin-1 receptor type 1-like. (512 aa)
	LOC108260350	Ribosomal protein S6 kinase. (779 aa)
	tank	TRAF family member-associated NF-kappa-B activator isoform X2. (344 aa)
	LOC108268454	C-C motif chemokine. (99 aa)
	il1b-2	Interleukin-1. (280 aa)
	ENSIPUP00000020164	annotation not available (180 aa)
	il1b	Interleukin-1. (280 aa)
	irak1	Interleukin-1 receptor-associated kinase 1 isoform X4. (718 aa)
	LOC108267889	Roquin-1-like isoform X2. (1118 aa)
	nkx3-1	Homeobox protein Nkx-3.1. (215 aa)
	LOC100304631	CC chemokine SCYA112 isoform X1. (151 aa)
	LOC108270518	C-C motif chemokine 21a-like. (86 aa)
	LOC108265970	Hyaluronidase. (435 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (870 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000000152	ST18	ENSIPUP00000000152	ENSIPUP00000000153	annotation not available	Suppression of tumorigenicity 18 protein isoform X2.	0.742
ENSIPUP00000020164	LOC108259002	ENSIPUP00000020164	ENSIPUP00000021902	annotation not available	Interleukin-1 receptor type 1-like.	0.797
ENSIPUP00000020164	LOC108266615	ENSIPUP00000020164	ENSIPUP00000006725	annotation not available	Interleukin-1 receptor-like 2.	0.798
ENSIPUP00000020164	LOC108266760	ENSIPUP00000020164	ENSIPUP00000006766	annotation not available	Interleukin-1 receptor-like 2.	0.797
ENSIPUP00000020164	LOC108276426	ENSIPUP00000020164	ENSIPUP00000028551	annotation not available	Tumor necrosis factor receptor superfamily member 5-like.	0.420
ENSIPUP00000020164	irak1	ENSIPUP00000020164	ENSIPUP00000019227	annotation not available	Interleukin-1 receptor-associated kinase 1 isoform X4.	0.619
ENSIPUP00000020164	irak3	ENSIPUP00000020164	ENSIPUP00000024585	annotation not available	Interleukin-1 receptor-associated kinase 3.	0.415
ENSIPUP00000020164	traf6	ENSIPUP00000020164	ENSIPUP00000032978	annotation not available	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.641
LOC100304631	LOC108261059	ENSIPUP00000011068	ENSIPUP00000028056	CC chemokine SCYA112 isoform X1.	C-C motif chemokine.	0.907
LOC108255518	LOC108270518	ENSIPUP00000030250	ENSIPUP00000010983	C-C motif chemokine 19-like isoform X1.	C-C motif chemokine 21a-like.	0.727
LOC108255518	LOC108280909	ENSIPUP00000030250	ENSIPUP00000024848	C-C motif chemokine 19-like isoform X1.	C-C motif chemokine 25-like.	0.727
LOC108259002	ENSIPUP00000020164	ENSIPUP00000021902	ENSIPUP00000020164	Interleukin-1 receptor type 1-like.	annotation not available	0.797
LOC108259002	LOC108266615	ENSIPUP00000021902	ENSIPUP00000006725	Interleukin-1 receptor type 1-like.	Interleukin-1 receptor-like 2.	0.906
LOC108259002	il1b	ENSIPUP00000021902	ENSIPUP00000020116	Interleukin-1 receptor type 1-like.	Interleukin-1.	0.978
LOC108259002	il1b-2	ENSIPUP00000021902	ENSIPUP00000020252	Interleukin-1 receptor type 1-like.	Interleukin-1.	0.978
LOC108259002	irak1	ENSIPUP00000021902	ENSIPUP00000019227	Interleukin-1 receptor type 1-like.	Interleukin-1 receptor-associated kinase 1 isoform X4.	0.756
LOC108259002	irak3	ENSIPUP00000021902	ENSIPUP00000024585	Interleukin-1 receptor type 1-like.	Interleukin-1 receptor-associated kinase 3.	0.568
LOC108259002	traf6	ENSIPUP00000021902	ENSIPUP00000032978	Interleukin-1 receptor type 1-like.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.780
LOC108260350	LOC108270373	ENSIPUP00000021727	ENSIPUP00000035368	Ribosomal protein S6 kinase.	Ribosomal protein S6 kinase.	0.901
LOC108261059	LOC100304631	ENSIPUP00000028056	ENSIPUP00000011068	C-C motif chemokine.	CC chemokine SCYA112 isoform X1.	0.907