STRINGSTRING
prkn prkn bnip3 bnip3 LOC108269913 LOC108269913 LOC108258856 LOC108258856 pink1 pink1 dcn dcn pgam5 pgam5 mul1 mul1 mief1 mief1 ddhd1 ddhd1 ralbp1 ralbp1 vps35 vps35 LOC108280720 LOC108280720
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prknParkin RBR E3 ubiquitin protein ligase. (330 aa)
bnip3BCL2/adenovirus E1B 19 kDa protein-interacting protein 3. (197 aa)
LOC108269913Phospholipase DDHD1-like isoform X2. (808 aa)
LOC108258856Mitochondrial dynamics protein MID51-like isoform X2. (468 aa)
pink1Serine/threonine-protein kinase PINK1, mitochondrial. (564 aa)
dcnDecorin; May affect the rate of fibrils formation. (365 aa)
pgam5Serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X2. (291 aa)
mul1Mitochondrial ubiquitin ligase activator of NFKB 1. (348 aa)
mief1Mitochondrial dynamics protein MID51. (471 aa)
ddhd1Phospholipase DDHD1. (769 aa)
ralbp1ralA-binding protein 1 isoform X1. (672 aa)
vps35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (751 aa)
LOC108280720Mitochondrial fission factor homolog A-like isoform X3. (277 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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