STRINGSTRING
rnaseh1 rnaseh1 nudt12 nudt12 LOC108271386 LOC108271386 exog exog rnaseh2a rnaseh2a dbr1 dbr1 ago2 ago2 ern2 ern2 fen1 fen1 rida rida pop5 pop5 tbl3 tbl3 rpp30 rpp30 tsr1 tsr1 LOC108267746 LOC108267746 mblac1 mblac1 dicer1 dicer1 LOC108264151 LOC108264151 rnasek rnasek b4galnt4 b4galnt4 LOC108275399 LOC108275399 LOC108261181 LOC108261181 kri1 kri1 LOC108280137 LOC108280137 ENSIPUP00000010272 ENSIPUP00000010272 ENSIPUP00000010618 ENSIPUP00000010618 nop9 nop9 ENSIPUP00000010753 ENSIPUP00000010753 LOC108277498 LOC108277498 nob1 nob1 tsen34 tsen34 LOC108272767 LOC108272767 LOC108279954 LOC108279954 ybey ybey rpp40 rpp40 LOC108280057 LOC108280057 ENSIPUP00000013592 ENSIPUP00000013592 endog endog rpp14 rpp14 LOC108264191 LOC108264191 ern1 ern1 ENSIPUP00000016600 ENSIPUP00000016600 LOC108278996 LOC108278996 tsen2 tsen2 LOC108254877 LOC108254877 abt1 abt1 smg6 smg6 prorp prorp LOC108262219 LOC108262219 ENSIPUP00000019681 ENSIPUP00000019681 snd1 snd1 ENSIPUP00000019792 ENSIPUP00000019792 pop4 pop4 lactb2 lactb2 rrs1 rrs1 utp23 utp23 LOC108259022 LOC108259022 LOC108270067 LOC108270067 LOC108280318 LOC108280318 ttc38 ttc38 LOC108257199 LOC108257199 piwil1 piwil1 zc3h12b zc3h12b LOC108264851 LOC108264851 rnaset2 rnaset2 LOC108279736 LOC108279736 LOC108279738 LOC108279738 bms1 bms1 rcl1 rcl1 pop1 pop1 piwil2 piwil2 ENSIPUP00000029310 ENSIPUP00000029310 endou endou LOC108260339 LOC108260339 LOC108268090 LOC108268090 ENSIPUP00000030517 ENSIPUP00000030517 drosha drosha pld6 pld6 nol9 nol9 endov endov elac2 elac2 cpsf3 cpsf3 ENSIPUP00000034611 ENSIPUP00000034611 LOC108256363 LOC108256363 rpp38 rpp38
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnaseh1Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (279 aa)
nudt12Peroxisomal NADH pyrophosphatase NUDT12 isoform X1. (453 aa)
LOC108271386Ribonuclease P protein subunit p21-like. (154 aa)
exogNuclease EXOG, mitochondrial. (352 aa)
rnaseh2aRibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (348 aa)
dbr1Lariat debranching enzyme. (574 aa)
ago2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (857 aa)
ern2Serine/threonine-protein kinase/endoribonuclease IRE2 isoform X1. (929 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
ridaRibonuclease UK114. (136 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (167 aa)
tbl3Transducin beta-like protein 3. (912 aa)
rpp30Ribonuclease P protein subunit p30. (269 aa)
tsr1pre-rRNA-processing protein TSR1 homolog. (846 aa)
LOC108267746Ribonuclease kappa-A-like. (101 aa)
mblac1Metallo-beta-lactamase domain-containing protein 1. (218 aa)
dicer1Endoribonuclease Dicer isoform X2; Belongs to the helicase family. Dicer subfamily. (1878 aa)
LOC108264151Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (1033 aa)
rnasekRibonuclease kappa. (101 aa)
b4galnt4Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (1245 aa)
LOC108275399Ribonuclease ZC3H12A-like. (623 aa)
LOC108261181Piwi-like protein 1. (150 aa)
kri1Protein KRI1 homolog. (764 aa)
LOC108280137Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (726 aa)
ENSIPUP00000010272annotation not available (175 aa)
ENSIPUP00000010618annotation not available (274 aa)
nop9Nucleolar protein 9. (625 aa)
ENSIPUP00000010753annotation not available (201 aa)
LOC108277498Ribonuclease Oy-like isoform X1; Belongs to the RNase T2 family. (260 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (477 aa)
tsen34tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] (321 aa)
LOC108272767Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (876 aa)
LOC108279954Beta-1,4-N-acetylgalactosaminyltransferase; Transfers N-acetylgalactosamine (GalNAc) from UDP-GalNAc to N-acetylglucosamine-beta-benzyl with a beta-1,4-linkage to form N,N'- diacetyllactosediamine, GalNAc-beta-1,4-GlcNAc structures in N-linked glycans and probably O-linked glycans. (711 aa)
ybeyPutative ribonuclease. (168 aa)
rpp40Ribonuclease P protein subunit p40. (357 aa)
LOC108280057Transcriptional protein SWT1-like isoform X2. (957 aa)
ENSIPUP00000013592annotation not available (145 aa)
endogEndonuclease. (305 aa)
rpp14Ribonuclease P protein subunit p14 isoform X2. (122 aa)
LOC108264191Ribonuclease P protein subunit p25-like protein. (229 aa)
ern1Serine/threonine-protein kinase/endoribonuclease IRE1. (1038 aa)
ENSIPUP00000016600annotation not available (233 aa)
LOC108278996poly(U)-specific endoribonuclease-B-like isoform X1. (283 aa)
tsen2tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (467 aa)
LOC108254877Bifunctional endoribonuclease and deubiquitinase ZC3H12A-like. (537 aa)
abt1Activator of basal transcription 1. (299 aa)
smg6Telomerase-binding protein EST1A isoform X1. (1606 aa)
prorpMitochondrial ribonuclease P protein 3 isoform X1. (579 aa)
LOC108262219Piwi-like protein 1. (160 aa)
ENSIPUP00000019681annotation not available (402 aa)
snd1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (915 aa)
ENSIPUP00000019792Uncharacterized LOC108260889. (255 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (220 aa)
lactb2Beta-lactamase-like protein 2. (285 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (348 aa)
utp23rRNA-processing protein UTP23 homolog. (254 aa)
LOC108259022Probable ribonuclease ZC3H12C. (790 aa)
LOC108270067Ribonuclease ZC3H12A-like. (605 aa)
LOC108280318LOW QUALITY PROTEIN: probable flap endonuclease 1 homolog. (325 aa)
ttc38Tetratricopeptide repeat protein 38. (466 aa)
LOC108257199Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (874 aa)
piwil1Piwi-like protein 1; Belongs to the argonaute family. (852 aa)
zc3h12bProbable ribonuclease ZC3H12B isoform X2. (982 aa)
LOC108264851poly(U)-specific endoribonuclease-C-like. (328 aa)
rnaset2Ribonuclease T2 isoform X1; Belongs to the RNase T2 family. (240 aa)
LOC108279736poly(U)-specific endoribonuclease-C-like. (289 aa)
LOC108279738poly(U)-specific endoribonuclease-like. (234 aa)
bms1Ribosome biogenesis protein BMS1 homolog. (1291 aa)
rcl1RNA 3'-terminal phosphate cyclase-like protein. (372 aa)
pop1Ribonucleases P/MRP protein subunit POP1 isoform X1. (995 aa)
piwil2Piwi-like protein 2 isoform X1; Belongs to the argonaute family. (1037 aa)
ENSIPUP00000029310annotation not available (135 aa)
endoupoly(U)-specific endoribonuclease. (302 aa)
LOC108260339Ribonuclease-like; Belongs to the pancreatic ribonuclease family. (143 aa)
LOC108268090Serine/threonine-protein kinase ppk4-like. (408 aa)
ENSIPUP00000030517annotation not available (221 aa)
droshaRibonuclease 3. (1277 aa)
pld6Mitochondrial cardiolipin hydrolase isoform X1. (263 aa)
nol9Polynucleotide 5'-hydroxyl-kinase NOL9. (719 aa)
endovEndonuclease V isoform X1. (271 aa)
elac2Zinc phosphodiesterase ELAC protein 2. (842 aa)
cpsf3Cleavage and polyadenylation specificity factor subunit 3. (738 aa)
ENSIPUP00000034611Argonaute RISC catalytic component 3a. (828 aa)
LOC108256363Protein argonaute-1; Belongs to the argonaute family. (858 aa)
rpp38LOW QUALITY PROTEIN: ribonuclease P protein subunit p38. (243 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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