27 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (504 aa)
	wdfy4	WD repeat- and FYVE domain-containing protein 4 isoform X2. (1769 aa)
	CLPB	Caseinolytic peptidase B protein homolog. (313 aa)
	ENSIPUP00000002810	annotation not available (216 aa)
	LOC108279384	Transforming growth factor beta; Belongs to the TGF-beta family. (380 aa)
	gbf1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1. (1879 aa)
	ddx58	Probable ATP-dependent RNA helicase DDX58. (898 aa)
	adar	Double-stranded RNA-specific adenosine deaminase. (1366 aa)
	gsdme	Non-syndromic hearing impairment protein 5. (484 aa)
	LOC108275399	Ribonuclease ZC3H12A-like. (623 aa)
	LOC108261209	Caseinolytic peptidase B protein homolog isoform X4. (285 aa)
	LOC108280750	Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
	ENSIPUP00000010213	Caseinolytic peptidase B protein homolog. (201 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (409 aa)
	lsm14a	Protein LSM14 homolog A isoform X1. (495 aa)
	tomm70	Mitochondrial import receptor subunit TOM70. (573 aa)
	sting1	Stimulator of Interferon genes protein. (395 aa)
	ifih1	Interferon-induced helicase C domain-containing protein 1. (1005 aa)
	LOC108270067	Ribonuclease ZC3H12A-like. (605 aa)
	pou2af1	B cell-specific coactivator of octamer binding factors. (245 aa)
	bax	Apoptosis regulator BAX. (189 aa)
	LOC108273898	Interferon regulatory factor 3-like. (462 aa)
	dhx58	Putative ATP-dependent RNA helicase DHX58. (677 aa)
	LOC108255518	C-C motif chemokine 19-like isoform X1. (115 aa)
	LOC108255519	C-C motif chemokine. (110 aa)
	LOC108274970	Protein LSM14 homolog A-like isoform X2. (459 aa)
	phb	Prohibitin. (279 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ENSIPUP00000002810	ENSIPUP00000002798	ENSIPUP00000002810	Caseinolytic peptidase B protein homolog.	annotation not available	0.653
ENSIPUP00000002810	CLPB	ENSIPUP00000002810	ENSIPUP00000002798	annotation not available	Caseinolytic peptidase B protein homolog.	0.653
ENSIPUP00000002810	ENSIPUP00000010213	ENSIPUP00000002810	ENSIPUP00000010213	annotation not available	Caseinolytic peptidase B protein homolog.	0.610
ENSIPUP00000002810	LOC108261209	ENSIPUP00000002810	ENSIPUP00000009100	annotation not available	Caseinolytic peptidase B protein homolog isoform X4.	0.837
ENSIPUP00000010213	ENSIPUP00000002810	ENSIPUP00000010213	ENSIPUP00000002810	Caseinolytic peptidase B protein homolog.	annotation not available	0.610
LOC108261209	ENSIPUP00000002810	ENSIPUP00000009100	ENSIPUP00000002810	Caseinolytic peptidase B protein homolog isoform X4.	annotation not available	0.837
LOC108273898	bax	ENSIPUP00000024255	ENSIPUP00000022942	Interferon regulatory factor 3-like.	Apoptosis regulator BAX.	0.584
LOC108273898	ddx58	ENSIPUP00000024255	ENSIPUP00000004513	Interferon regulatory factor 3-like.	Probable ATP-dependent RNA helicase DDX58.	0.744
LOC108273898	dhx58	ENSIPUP00000024255	ENSIPUP00000029495	Interferon regulatory factor 3-like.	Putative ATP-dependent RNA helicase DHX58.	0.759
LOC108273898	ifih1	ENSIPUP00000024255	ENSIPUP00000019810	Interferon regulatory factor 3-like.	Interferon-induced helicase C domain-containing protein 1.	0.717
LOC108273898	sting1	ENSIPUP00000024255	ENSIPUP00000017681	Interferon regulatory factor 3-like.	Stimulator of Interferon genes protein.	0.971
LOC108279384	LOC108280750	ENSIPUP00000003544	ENSIPUP00000009954	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
LOC108280750	LOC108279384	ENSIPUP00000009954	ENSIPUP00000003544	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
adar	ddx58	ENSIPUP00000004662	ENSIPUP00000004513	Double-stranded RNA-specific adenosine deaminase.	Probable ATP-dependent RNA helicase DDX58.	0.439
adar	dhx58	ENSIPUP00000004662	ENSIPUP00000029495	Double-stranded RNA-specific adenosine deaminase.	Putative ATP-dependent RNA helicase DHX58.	0.404
adar	ifih1	ENSIPUP00000004662	ENSIPUP00000019810	Double-stranded RNA-specific adenosine deaminase.	Interferon-induced helicase C domain-containing protein 1.	0.574
bax	LOC108273898	ENSIPUP00000022942	ENSIPUP00000024255	Apoptosis regulator BAX.	Interferon regulatory factor 3-like.	0.584
ddx58	LOC108273898	ENSIPUP00000004513	ENSIPUP00000024255	Probable ATP-dependent RNA helicase DDX58.	Interferon regulatory factor 3-like.	0.744
ddx58	adar	ENSIPUP00000004513	ENSIPUP00000004662	Probable ATP-dependent RNA helicase DDX58.	Double-stranded RNA-specific adenosine deaminase.	0.439
ddx58	dhx58	ENSIPUP00000004513	ENSIPUP00000029495	Probable ATP-dependent RNA helicase DDX58.	Putative ATP-dependent RNA helicase DHX58.	0.989