STRINGSTRING
pdcd4 pdcd4 LOC108263783 LOC108263783 f2 f2 LOC108266111 LOC108266111 LOC108275399 LOC108275399 abcd2 abcd2 LOC108258821 LOC108258821 LOC108267187 LOC108267187 LOC108270067 LOC108270067 ccdc142 ccdc142 LOC108256634 LOC108256634 LOC108256767 LOC108256767 cuedc2 cuedc2 c16h5orf30 c16h5orf30
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pdcd4Programmed cell death protein 4. (467 aa)
LOC108263783Programmed cell death protein 4-like isoform X1. (469 aa)
f2Prothrombin; Belongs to the peptidase S1 family. (620 aa)
LOC108266111Interleukin-1 receptor type 2-like. (435 aa)
LOC108275399Ribonuclease ZC3H12A-like. (623 aa)
abcd2ATP-binding cassette sub-family D member 2. (746 aa)
LOC108258821Phospholipase A(2). (140 aa)
LOC108267187Apolipoprotein D-like; Belongs to the calycin superfamily. Lipocalin family. (198 aa)
LOC108270067Ribonuclease ZC3H12A-like. (605 aa)
ccdc142Coiled-coil domain-containing protein 142 isoform X2. (1025 aa)
LOC108256634Apolipoprotein D-like; Belongs to the calycin superfamily. Lipocalin family. (205 aa)
LOC108256767Phospholipase A(2). (153 aa)
cuedc2CUE domain-containing protein 2 isoform X1. (277 aa)
c16h5orf30UNC119-binding protein C5orf30 homolog. (206 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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