19 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rell1	RELT-like protein 1 isoform X1. (261 aa)
	ENSIPUP00000004727	annotation not available (151 aa)
	LOC108270447	SAM and SH3 domain-containing protein 1-like isoform X1. (1027 aa)
	LOC108264167	Bone morphogenetic protein 2-like. (420 aa)
	LOC108274084	Dual specificity mitogen-activated protein kinase kinase 6 isoform X1. (410 aa)
	mfhas1	Malignant fibrous histiocytoma-amplified sequence 1 isoform X1. (992 aa)
	LOC108278540	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (107 aa)
	LOC108278539	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (153 aa)
	sash1	SAM and SH3 domain-containing protein 1 isoform X2. (1171 aa)
	map3k4	Mitogen-activated protein kinase kinase kinase 4 isoform X2. (1528 aa)
	LOC108275399	Ribonuclease ZC3H12A-like. (623 aa)
	bmp4	Bone morphogenetic protein 4. (402 aa)
	LOC100304688	Uncharacterized protein LOC100304688. (172 aa)
	LOC108272203	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (210 aa)
	LOC108280806	Growth arrest and DNA damage-inducible protein GADD45 alpha-like. (158 aa)
	LOC108267448	Growth arrest and DNA damage-inducible protein GADD45 beta-like. (158 aa)
	LOC108270067	Ribonuclease ZC3H12A-like. (605 aa)
	LOC108264936	Growth arrest and DNA damage-inducible protein GADD45 gamma-like. (161 aa)
	ncf1	Neutrophil cytosol factor 1. (401 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108264936	map3k4	ENSIPUP00000032015	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.968
LOC108267448	map3k4	ENSIPUP00000020877	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.836
LOC108272203	map3k4	ENSIPUP00000017308	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.962
LOC108274084	map3k4	ENSIPUP00000006048	ENSIPUP00000007937	Dual specificity mitogen-activated protein kinase kinase 6 isoform X1.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.962
LOC108278539	map3k4	ENSIPUP00000006912	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.953
LOC108278540	map3k4	ENSIPUP00000006898	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.953
LOC108280806	map3k4	ENSIPUP00000020570	ENSIPUP00000007937	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	0.962
map3k4	LOC108264936	ENSIPUP00000007937	ENSIPUP00000032015	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.968
map3k4	LOC108267448	ENSIPUP00000007937	ENSIPUP00000020877	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 beta-like.	0.836
map3k4	LOC108272203	ENSIPUP00000007937	ENSIPUP00000017308	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	0.962
map3k4	LOC108274084	ENSIPUP00000007937	ENSIPUP00000006048	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Dual specificity mitogen-activated protein kinase kinase 6 isoform X1.	0.962
map3k4	LOC108278539	ENSIPUP00000007937	ENSIPUP00000006912	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.953
map3k4	LOC108278540	ENSIPUP00000007937	ENSIPUP00000006898	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 gamma-like.	0.953
map3k4	LOC108280806	ENSIPUP00000007937	ENSIPUP00000020570	Mitogen-activated protein kinase kinase kinase 4 isoform X2.	Growth arrest and DNA damage-inducible protein GADD45 alpha-like.	0.962