41 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nmi	N-myc-interactor. (384 aa)
	rc3h1	Roquin-1 isoform X1. (1102 aa)
	LOC108273944	Histone acetyltransferase p300-like isoform X6. (2631 aa)
	trim44	Tripartite motif-containing protein 44 isoform X2. (333 aa)
	c1qtnf4	Complement C1q tumor necrosis factor-related protein 4. (300 aa)
	grem1	Gremlin-1 isoform X2. (176 aa)
	phb	Prohibitin. (279 aa)
	LOC108272975	Histone acetyltransferase p300-like isoform X2. (2494 aa)
	LOC108261706	Uncharacterized protein LOC108261706. (2221 aa)
	tcim	Protein C8orf4 homolog. (100 aa)
	LOC108272987	Uncharacterized protein LOC108272987. (2000 aa)
	LOC108276736	Roquin-2-like. (1034 aa)
	LOC108255519	C-C motif chemokine. (110 aa)
	LOC108255518	C-C motif chemokine 19-like isoform X1. (115 aa)
	eif2ak2	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2. (679 aa)
	lrrc19	Leucine-rich repeat-containing protein 19. (335 aa)
	LOC108264201	Complement C1q tumor necrosis factor-related protein 4-like isoform X1. (357 aa)
	LOC108272580	Protein tyrosine phosphatase type IVA 3-like. (173 aa)
	ccdc142	Coiled-coil domain-containing protein 142 isoform X2. (1025 aa)
	LOC108274760	Nuclear factor of activated T-cells 5-like isoform X2. (1446 aa)
	LOC108259822	ectodysplasin-A-like; Belongs to the tumor necrosis factor family. (290 aa)
	nod2	Nucleotide-binding oligomerization domain-containing protein 2. (981 aa)
	LOC108270415	Gremlin-2-like. (195 aa)
	il1b-2	Interleukin-1. (280 aa)
	ENSIPUP00000020164	annotation not available (180 aa)
	il1b	Interleukin-1. (280 aa)
	ilk	Integrin-linked protein kinase. (452 aa)
	LOC108258817	Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family. (234 aa)
	pdcd4	Programmed cell death protein 4. (467 aa)
	rbck1	ranBP-type and C3HC4-type zinc finger-containing protein 1. (513 aa)
	LOC108271072	Nuclear factor of activated T-cells 5-like isoform X1. (1241 aa)
	ifi35	Interferon-induced 35 kDa protein. (371 aa)
	LOC108267889	Roquin-1-like isoform X2. (1118 aa)
	nod1	Nucleotide-binding oligomerization domain-containing protein 1. (946 aa)
	LOC108256756	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (248 aa)
	c7h20orf27	UPF0687 protein C20orf27 homolog. (176 aa)
	sash1	SAM and SH3 domain-containing protein 1 isoform X2. (1171 aa)
	ptp4a3	Protein tyrosine phosphatase type IVA 3. (173 aa)
	LOC108270447	SAM and SH3 domain-containing protein 1-like isoform X1. (1027 aa)
	ENSIPUP00000004727	annotation not available (151 aa)
	LOC108263783	Programmed cell death protein 4-like isoform X1. (469 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108267889	LOC108276736	ENSIPUP00000013407	ENSIPUP00000031885	Roquin-1-like isoform X2.	Roquin-2-like.	0.576
LOC108276736	LOC108267889	ENSIPUP00000031885	ENSIPUP00000013407	Roquin-2-like.	Roquin-1-like isoform X2.	0.576
LOC108276736	rc3h1	ENSIPUP00000031885	ENSIPUP00000037095	Roquin-2-like.	Roquin-1 isoform X1.	0.577
eif2ak2	ifi35	ENSIPUP00000029486	ENSIPUP00000014509	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2.	Interferon-induced 35 kDa protein.	0.494
eif2ak2	nod1	ENSIPUP00000029486	ENSIPUP00000012839	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2.	Nucleotide-binding oligomerization domain-containing protein 1.	0.403
ifi35	eif2ak2	ENSIPUP00000014509	ENSIPUP00000029486	Interferon-induced 35 kDa protein.	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2.	0.494
ifi35	nmi	ENSIPUP00000014509	ENSIPUP00000002604	Interferon-induced 35 kDa protein.	N-myc-interactor.	0.930
ifi35	rbck1	ENSIPUP00000014509	ENSIPUP00000014742	Interferon-induced 35 kDa protein.	ranBP-type and C3HC4-type zinc finger-containing protein 1.	0.448
il1b	il1b-2	ENSIPUP00000020116	ENSIPUP00000020252	Interleukin-1.	Interleukin-1.	0.900
il1b	nod1	ENSIPUP00000020116	ENSIPUP00000012839	Interleukin-1.	Nucleotide-binding oligomerization domain-containing protein 1.	0.435
il1b-2	il1b	ENSIPUP00000020252	ENSIPUP00000020116	Interleukin-1.	Interleukin-1.	0.900
il1b-2	nod1	ENSIPUP00000020252	ENSIPUP00000012839	Interleukin-1.	Nucleotide-binding oligomerization domain-containing protein 1.	0.435
nmi	ifi35	ENSIPUP00000002604	ENSIPUP00000014509	N-myc-interactor.	Interferon-induced 35 kDa protein.	0.930
nod1	eif2ak2	ENSIPUP00000012839	ENSIPUP00000029486	Nucleotide-binding oligomerization domain-containing protein 1.	Interferon-induced, double-stranded RNA-activated protein kinase isoform X2.	0.403
nod1	il1b	ENSIPUP00000012839	ENSIPUP00000020116	Nucleotide-binding oligomerization domain-containing protein 1.	Interleukin-1.	0.435
nod1	il1b-2	ENSIPUP00000012839	ENSIPUP00000020252	Nucleotide-binding oligomerization domain-containing protein 1.	Interleukin-1.	0.435
nod1	nod2	ENSIPUP00000012839	ENSIPUP00000023997	Nucleotide-binding oligomerization domain-containing protein 1.	Nucleotide-binding oligomerization domain-containing protein 2.	0.481
nod2	nod1	ENSIPUP00000023997	ENSIPUP00000012839	Nucleotide-binding oligomerization domain-containing protein 2.	Nucleotide-binding oligomerization domain-containing protein 1.	0.481
rbck1	ifi35	ENSIPUP00000014742	ENSIPUP00000014509	ranBP-type and C3HC4-type zinc finger-containing protein 1.	Interferon-induced 35 kDa protein.	0.448
rc3h1	LOC108276736	ENSIPUP00000037095	ENSIPUP00000031885	Roquin-1 isoform X1.	Roquin-2-like.	0.577