STRINGSTRING
tspo tspo htt htt pink1 pink1 ambra1 ambra1 prkn prkn vps13d vps13d fbxo7 fbxo7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tspoTranslocator protein isoform X1. (161 aa)
httHuntingtin. (3115 aa)
pink1Serine/threonine-protein kinase PINK1, mitochondrial. (564 aa)
ambra1Activating molecule in BECN1-regulated autophagy protein 1 isoform X3. (1371 aa)
prknParkin RBR E3 ubiquitin protein ligase. (330 aa)
vps13dVacuolar protein sorting-associated protein 13D isoform X6. (4359 aa)
fbxo7F-box only protein 7 isoform X1. (505 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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