16 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108267606	Mothers against decapentaplegic homolog. (574 aa)
	smad4	Mothers against decapentaplegic homolog. (546 aa)
	bmp4	Bone morphogenetic protein 4. (402 aa)
	dkk1	Dickkopf-related protein 1. (236 aa)
	nkx2-5	Homeobox protein Nkx-2.5. (308 aa)
	LOC108261575	Neuronal PAS domain-containing protein 4-like isoform X1. (603 aa)
	dhx36	ATP-dependent RNA helicase DHX36. (921 aa)
	abi3bp	Target of Nesh-SH3 isoform X1. (1383 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (401 aa)
	LOC108273360	Mothers against decapentaplegic homolog. (561 aa)
	LOC108268908	Transforming growth factor beta; Belongs to the TGF-beta family. (415 aa)
	LOC108255640	Mothers against decapentaplegic homolog. (523 aa)
	sox5	Transcription factor SOX-5. (713 aa)
	LOC108262840	Dickkopf-related protein 1-like. (282 aa)
	sox6	Transcription factor SOX-6 isoform X7. (759 aa)
	LOC108264167	Bone morphogenetic protein 2-like. (420 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108255640	LOC108264167	ENSIPUP00000035179	ENSIPUP00000005898	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 2-like.	0.639
LOC108255640	bmp4	ENSIPUP00000035179	ENSIPUP00000008975	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 4.	0.695
LOC108264167	LOC108255640	ENSIPUP00000005898	ENSIPUP00000035179	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog.	0.639
LOC108264167	LOC108267606	ENSIPUP00000005898	ENSIPUP00000006258	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog.	0.639
LOC108264167	LOC108273360	ENSIPUP00000005898	ENSIPUP00000027339	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog.	0.639
LOC108264167	smad4	ENSIPUP00000005898	ENSIPUP00000007352	Bone morphogenetic protein 2-like.	Mothers against decapentaplegic homolog.	0.639
LOC108267606	LOC108264167	ENSIPUP00000006258	ENSIPUP00000005898	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 2-like.	0.639
LOC108267606	LOC108273360	ENSIPUP00000006258	ENSIPUP00000027339	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC108267606	bmp4	ENSIPUP00000006258	ENSIPUP00000008975	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 4.	0.639
LOC108267606	smad4	ENSIPUP00000006258	ENSIPUP00000007352	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC108268908	tgfb2	ENSIPUP00000033493	ENSIPUP00000025520	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.901
LOC108273360	LOC108264167	ENSIPUP00000027339	ENSIPUP00000005898	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 2-like.	0.639
LOC108273360	LOC108267606	ENSIPUP00000027339	ENSIPUP00000006258	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC108273360	bmp4	ENSIPUP00000027339	ENSIPUP00000008975	Mothers against decapentaplegic homolog.	Bone morphogenetic protein 4.	0.639
LOC108273360	smad4	ENSIPUP00000027339	ENSIPUP00000007352	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
bmp4	LOC108255640	ENSIPUP00000008975	ENSIPUP00000035179	Bone morphogenetic protein 4.	Mothers against decapentaplegic homolog.	0.695
bmp4	LOC108267606	ENSIPUP00000008975	ENSIPUP00000006258	Bone morphogenetic protein 4.	Mothers against decapentaplegic homolog.	0.639
bmp4	LOC108273360	ENSIPUP00000008975	ENSIPUP00000027339	Bone morphogenetic protein 4.	Mothers against decapentaplegic homolog.	0.639
bmp4	nkx2-5	ENSIPUP00000008975	ENSIPUP00000015162	Bone morphogenetic protein 4.	Homeobox protein Nkx-2.5.	0.493
bmp4	smad4	ENSIPUP00000008975	ENSIPUP00000007352	Bone morphogenetic protein 4.	Mothers against decapentaplegic homolog.	0.695