(41 nodes) Ciliary transition zone network (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmem67	Meckelin. (984 aa)
	LOC108274527	Transmembrane protein 107-like. (142 aa)
	cc2d2a	Coiled-coil and C2 domain-containing protein 2A isoform X3. (1666 aa)
	LOC108268819	Transmembrane protein 216-like isoform X2. (139 aa)
	topors	E3 ubiquitin-protein ligase Topors isoform X1. (741 aa)
	b9d2	B9 domain-containing protein 2. (185 aa)
	LOC108275721	E3 ubiquitin-protein ligase Topors-like. (868 aa)
	rp1l1	Retinitis pigmentosa 1-like 1 protein. (2425 aa)
	spata7	Spermatogenesis-associated protein 7 isoform X1. (541 aa)
	LOC108263849	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family. (207 aa)
	bicc1	Protein bicaudal C homolog 1 isoform X4. (1001 aa)
	LOC108274465	Transmembrane protein 80-like. (145 aa)
	LOC108274692	Protein bicaudal C homolog 1-like isoform X2. (879 aa)
	tmem107	Transmembrane protein 107 isoform X2. (177 aa)
	lca5	Lebercilin. (740 aa)
	LOC108266264	Transmembrane protein 237A-like. (356 aa)
	fam92a	Protein FAM92A1 isoform X1. (307 aa)
	poc5	Centrosomal protein POC5 isoform X1. (583 aa)
	LOC108269588	Protein bicaudal C homolog 1-B-like. (93 aa)
	tbcc	Tubulin-specific chaperone C. (351 aa)
	LOC108274068	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family. (196 aa)
	b9d1	B9 domain-containing protein 1. (275 aa)
	ENSIPUP00000026390	annotation not available (466 aa)
	nphp1	LOW QUALITY PROTEIN: nephrocystin-1. (674 aa)
	tmem17	Transmembrane protein 17. (191 aa)
	LOC108279680	UPF0606 protein KIAA1549-like isoform X8. (1394 aa)
	LOC108255850	Transmembrane protein 17A-like. (216 aa)
	LOC108263641	Centriole, cilia and spindle-associated protein-like isoform X1. (261 aa)
	LOC108274004	Tectonic-3-like isoform X1. (560 aa)
	LOC108279273	Magnesium transporter NIPA2-like. (405 aa)
	tctn2	Tectonic-2 isoform X1. (709 aa)
	tmem237	Transmembrane protein 237 isoform X1. (424 aa)
	iqcb1	IQ calmodulin-binding motif-containing protein 1. (592 aa)
	cfap410	Protein C21orf2 isoform X1. (247 aa)
	unc119b	Protein unc-119 homolog B. (243 aa)
	mks1	Meckel syndrome type 1 protein. (557 aa)
	rpgrip1l	Protein fantom. (1281 aa)
	fam161b	Protein FAM161B isoform X2. (597 aa)
	tctn1	Tectonic-1 isoform X1. (669 aa)
	fam161a	Protein FAM161A isoform X1. (429 aa)
	c16h5orf30	UNC119-binding protein C5orf30 homolog. (206 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000026390	cc2d2a	ENSIPUP00000026390	ENSIPUP00000001514	annotation not available	Coiled-coil and C2 domain-containing protein 2A isoform X3.	0.432
ENSIPUP00000026390	iqcb1	ENSIPUP00000026390	ENSIPUP00000031585	annotation not available	IQ calmodulin-binding motif-containing protein 1.	0.559
ENSIPUP00000026390	lca5	ENSIPUP00000026390	ENSIPUP00000015126	annotation not available	Lebercilin.	0.571
ENSIPUP00000026390	nphp1	ENSIPUP00000026390	ENSIPUP00000027251	annotation not available	LOW QUALITY PROTEIN: nephrocystin-1.	0.677
ENSIPUP00000026390	spata7	ENSIPUP00000026390	ENSIPUP00000007579	annotation not available	Spermatogenesis-associated protein 7 isoform X1.	0.630
LOC108255850	LOC108266264	ENSIPUP00000028819	ENSIPUP00000017848	Transmembrane protein 17A-like.	Transmembrane protein 237A-like.	0.406
LOC108255850	LOC108268819	ENSIPUP00000028819	ENSIPUP00000001883	Transmembrane protein 17A-like.	Transmembrane protein 216-like isoform X2.	0.461
LOC108255850	LOC108274465	ENSIPUP00000028819	ENSIPUP00000012773	Transmembrane protein 17A-like.	Transmembrane protein 80-like.	0.407
LOC108255850	b9d1	ENSIPUP00000028819	ENSIPUP00000023915	Transmembrane protein 17A-like.	B9 domain-containing protein 1.	0.521
LOC108255850	b9d2	ENSIPUP00000028819	ENSIPUP00000003562	Transmembrane protein 17A-like.	B9 domain-containing protein 2.	0.478
LOC108255850	cc2d2a	ENSIPUP00000028819	ENSIPUP00000001514	Transmembrane protein 17A-like.	Coiled-coil and C2 domain-containing protein 2A isoform X3.	0.504
LOC108255850	mks1	ENSIPUP00000028819	ENSIPUP00000033340	Transmembrane protein 17A-like.	Meckel syndrome type 1 protein.	0.447
LOC108255850	nphp1	ENSIPUP00000028819	ENSIPUP00000027251	Transmembrane protein 17A-like.	LOW QUALITY PROTEIN: nephrocystin-1.	0.515
LOC108255850	rpgrip1l	ENSIPUP00000028819	ENSIPUP00000034201	Transmembrane protein 17A-like.	Protein fantom.	0.455
LOC108255850	tmem237	ENSIPUP00000028819	ENSIPUP00000030853	Transmembrane protein 17A-like.	Transmembrane protein 237 isoform X1.	0.406
LOC108255850	tmem67	ENSIPUP00000028819	ENSIPUP00000029199	Transmembrane protein 17A-like.	Meckelin.	0.510
LOC108263849	b9d2	ENSIPUP00000012172	ENSIPUP00000003562	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	B9 domain-containing protein 2.	0.411
LOC108263849	rpgrip1l	ENSIPUP00000012172	ENSIPUP00000034201	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Protein fantom.	0.455
LOC108263849	tbcc	ENSIPUP00000012172	ENSIPUP00000021844	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Tubulin-specific chaperone C.	0.847
LOC108263849	unc119b	ENSIPUP00000012172	ENSIPUP00000032454	ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.	Protein unc-119 homolog B.	0.754