(13 nodes) Tyrosine-protein kinase, receptor class II, conserved site network (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108271091	Tyrosine-protein kinase receptor. (1357 aa)
	ddr1	Epithelial discoidin domain-containing receptor 1 isoform X1. (1051 aa)
	ddr2	Discoidin domain-containing receptor 2 isoform X1. (859 aa)
	ntrk1	Tyrosine-protein kinase receptor. (802 aa)
	ntrk2	Tyrosine-protein kinase receptor. (799 aa)
	LOC108270425	Tyrosine-protein kinase receptor. (669 aa)
	LOC108267827	Tyrosine-protein kinase receptor. (1341 aa)
	LOC108259739	Tyrosine-protein kinase receptor. (784 aa)
	ltk	Tyrosine-protein kinase receptor. (1502 aa)
	ntrk3	Tyrosine-protein kinase receptor. (817 aa)
	igf1r	Tyrosine-protein kinase receptor. (1395 aa)
	LOC108255554	Discoidin domain-containing receptor 2-like. (864 aa)
	LOC108271075	Tyrosine-protein kinase receptor. (1565 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108267827	LOC108271091	ENSIPUP00000022262	ENSIPUP00000033057	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108267827	igf1r	ENSIPUP00000022262	ENSIPUP00000034569	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108271091	LOC108267827	ENSIPUP00000033057	ENSIPUP00000022262	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108271091	igf1r	ENSIPUP00000033057	ENSIPUP00000034569	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
igf1r	LOC108267827	ENSIPUP00000034569	ENSIPUP00000022262	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
igf1r	LOC108271091	ENSIPUP00000034569	ENSIPUP00000033057	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901