(33 nodes) Chromo-like domain superfamily network (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arid4a	AT-rich interactive domain-containing protein 4A. (1387 aa)
	LOC108260787	Chromobox protein homolog 6-like. (498 aa)
	cbx3	Chromobox protein homolog 3 isoform X2. (209 aa)
	chd3	chromodomain-helicase-DNA-binding protein 3 isoform X2. (1687 aa)
	LOC108265881	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (419 aa)
	chd6	chromodomain-helicase-DNA-binding protein 6 isoform X1. (2938 aa)
	mphosph8	M-phase phosphoprotein 8 isoform X1. (946 aa)
	LOC108261002	Chromobox protein homolog 8-like isoform X1. (355 aa)
	LOC108260285	E3 SUMO-protein ligase CBX4-like. (527 aa)
	morf4l1	Mortality factor 4-like protein 1. (317 aa)
	LOC108273000	Chromobox protein homolog 7-like. (397 aa)
	cbx4	E3 SUMO-protein ligase CBX4. (134 aa)
	cbx8	Chromobox protein homolog 8. (374 aa)
	cbx5	Chromobox protein homolog 5. (225 aa)
	cbx2	Chromobox protein homolog 2 isoform X1. (519 aa)
	LOC108263827	Uncharacterized protein LOC108263827. (605 aa)
	LOC108267737	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2544 aa)
	cbx1	Chromobox protein homolog 1. (208 aa)
	chd5	chromodomain-helicase-DNA-binding protein 5 isoform X2. (1809 aa)
	chd4	chromodomain-helicase-DNA-binding protein 4. (1946 aa)
	cdyl2	Chromodomain Y-like protein 2. (498 aa)
	kat8	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (501 aa)
	chd7	chromodomain-helicase-DNA-binding protein 7. (2276 aa)
	chd9	chromodomain-helicase-DNA-binding protein 9 isoform X2. (2408 aa)
	cdyl	Chromodomain Y-like protein. (569 aa)
	LOC108259424	Chromobox protein homolog 6-like. (473 aa)
	msl3	Male-specific lethal 3 homolog isoform X1. (540 aa)
	cbx3-3	Chromobox protein-like protein 3 isoform X1. (221 aa)
	arid4b	AT-rich interactive domain-containing protein 4B isoform X2. (1277 aa)
	kat5	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (435 aa)
	chd2	chromodomain-helicase-DNA-binding protein 2 isoform X1. (1723 aa)
	LOC108273945	Chromobox protein homolog 7-like. (244 aa)
	chd1	chromodomain-helicase-DNA-binding protein 1 isoform X1. (1816 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108259424	LOC108260285	ENSIPUP00000014932	ENSIPUP00000008251	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4-like.	0.753
LOC108259424	LOC108260787	ENSIPUP00000014932	ENSIPUP00000002946	Chromobox protein homolog 6-like.	Chromobox protein homolog 6-like.	0.665
LOC108259424	cbx2	ENSIPUP00000014932	ENSIPUP00000032738	Chromobox protein homolog 6-like.	Chromobox protein homolog 2 isoform X1.	0.778
LOC108259424	cbx4	ENSIPUP00000014932	ENSIPUP00000033563	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4.	0.753
LOC108260285	LOC108259424	ENSIPUP00000008251	ENSIPUP00000014932	E3 SUMO-protein ligase CBX4-like.	Chromobox protein homolog 6-like.	0.753
LOC108260285	LOC108260787	ENSIPUP00000008251	ENSIPUP00000002946	E3 SUMO-protein ligase CBX4-like.	Chromobox protein homolog 6-like.	0.657
LOC108260285	LOC108261002	ENSIPUP00000008251	ENSIPUP00000008219	E3 SUMO-protein ligase CBX4-like.	Chromobox protein homolog 8-like isoform X1.	0.816
LOC108260285	cbx2	ENSIPUP00000008251	ENSIPUP00000032738	E3 SUMO-protein ligase CBX4-like.	Chromobox protein homolog 2 isoform X1.	0.839
LOC108260285	cbx8	ENSIPUP00000008251	ENSIPUP00000033544	E3 SUMO-protein ligase CBX4-like.	Chromobox protein homolog 8.	0.816
LOC108260787	LOC108259424	ENSIPUP00000002946	ENSIPUP00000014932	Chromobox protein homolog 6-like.	Chromobox protein homolog 6-like.	0.665
LOC108260787	LOC108260285	ENSIPUP00000002946	ENSIPUP00000008251	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4-like.	0.657
LOC108260787	LOC108261002	ENSIPUP00000002946	ENSIPUP00000008219	Chromobox protein homolog 6-like.	Chromobox protein homolog 8-like isoform X1.	0.698
LOC108260787	LOC108273000	ENSIPUP00000002946	ENSIPUP00000033754	Chromobox protein homolog 6-like.	Chromobox protein homolog 7-like.	0.404
LOC108260787	LOC108273945	ENSIPUP00000002946	ENSIPUP00000001102	Chromobox protein homolog 6-like.	Chromobox protein homolog 7-like.	0.404
LOC108260787	cbx2	ENSIPUP00000002946	ENSIPUP00000032738	Chromobox protein homolog 6-like.	Chromobox protein homolog 2 isoform X1.	0.664
LOC108260787	cbx4	ENSIPUP00000002946	ENSIPUP00000033563	Chromobox protein homolog 6-like.	E3 SUMO-protein ligase CBX4.	0.657
LOC108260787	cbx8	ENSIPUP00000002946	ENSIPUP00000033544	Chromobox protein homolog 6-like.	Chromobox protein homolog 8.	0.698
LOC108261002	LOC108260285	ENSIPUP00000008219	ENSIPUP00000008251	Chromobox protein homolog 8-like isoform X1.	E3 SUMO-protein ligase CBX4-like.	0.816
LOC108261002	LOC108260787	ENSIPUP00000008219	ENSIPUP00000002946	Chromobox protein homolog 8-like isoform X1.	Chromobox protein homolog 6-like.	0.698
LOC108261002	cbx2	ENSIPUP00000008219	ENSIPUP00000032738	Chromobox protein homolog 8-like isoform X1.	Chromobox protein homolog 2 isoform X1.	0.817