STRINGSTRING
LOC108271213 LOC108271213 meiob meiob pold3 pold3 pold2 pold2 rfc1 rfc1 rad18 rad18 rpa1 rpa1 uba52 uba52 kxd1 kxd1 cul4a cul4a LOC108272412 LOC108272412 rfc4 rfc4 pold4 pold4 rpa2 rpa2 rps27a rps27a atad5 atad5 pole2 pole2 rpa3 rpa3 rcbtb1 rcbtb1 rcbtb2 rcbtb2 LOC108278809 LOC108278809 LOC108279000 LOC108279000 dtl dtl LOC108273255 LOC108273255 rbx1 rbx1 pole pole rfc5 rfc5 cul4b cul4b pold1 pold1 pcna pcna rfc2 rfc2 wdr48 wdr48 rfc3 rfc3 LOC108268031 LOC108268031 pole3 pole3 pole4 pole4 usp1 usp1 ddb1 ddb1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108271213C-C motif chemokine 20-like. (127 aa)
meiobMeiosis-specific with OB domain-containing protein. (466 aa)
pold3DNA polymerase delta subunit 3 isoform X1. (471 aa)
pold2DNA polymerase delta subunit 2. (467 aa)
rfc1Replication factor C subunit 1. (1129 aa)
rad18E3 ubiquitin-protein ligase RAD18 isoform X1. (454 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
cul4acullin-4A; Belongs to the cullin family. (741 aa)
LOC108272412Replication protein A 32 kDa subunit-like. (251 aa)
rfc4Replication factor C subunit 4 isoform X1. (358 aa)
pold4DNA polymerase delta subunit 4. (109 aa)
rpa2Replication protein A 32 kDa subunit. (294 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
atad5ATPase family AAA domain-containing protein 5 isoform X1. (1798 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
rcbtb1RCC1 and BTB domain-containing protein 1. (531 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (540 aa)
LOC108278809Ubiquitin-conjugating enzyme E2 B-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
LOC108279000E3 ubiquitin-protein ligase RBX1-like. (108 aa)
dtlDenticleless protein homolog isoform X1. (630 aa)
LOC108273255ATPase family AAA domain-containing protein 5-like. (927 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2286 aa)
rfc5Replication factor C subunit 5. (339 aa)
cul4bcullin-4B; Belongs to the cullin family. (854 aa)
pold1DNA polymerase. (1066 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
rfc2Replication factor C subunit 2. (357 aa)
wdr48WD repeat-containing protein 48 isoform X1. (681 aa)
rfc3Replication factor C subunit 3. (356 aa)
LOC108268031WD repeat-containing protein 48 isoform X1. (677 aa)
pole3DNA polymerase epsilon subunit 3. (149 aa)
pole4DNA polymerase epsilon subunit 4. (125 aa)
usp1Ubiquitin carboxyl-terminal hydrolase. (765 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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