STRINGSTRING
spata5 spata5 uba52 uba52 kxd1 kxd1 nploc4 nploc4 vcp vcp rfc3 rfc3 sprtn sprtn LOC108272412 LOC108272412 rfc4 rfc4 rpa2 rpa2 rps27a rps27a atad5 atad5 spata5l1 spata5l1 polh polh rpa3 rpa3 rfc5 rfc5 rcbtb1 rcbtb1 rcbtb2 rcbtb2 LOC108273255 LOC108273255 rchy1 rchy1 pcna pcna rfc2 rfc2 ufd1 ufd1 rpa1 rpa1 rfc1 rfc1 meiob meiob
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spata5Spermatogenesis-associated protein 5. (796 aa)
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
kxd1kxDL motif-containing protein 1 isoform X2. (187 aa)
nploc4Nuclear protein localization protein 4 homolog. (502 aa)
vcpTransitional Endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)
rfc3Replication factor C subunit 3. (356 aa)
sprtnsprT-like domain-containing protein Spartan. (744 aa)
LOC108272412Replication protein A 32 kDa subunit-like. (251 aa)
rfc4Replication factor C subunit 4 isoform X1. (358 aa)
rpa2Replication protein A 32 kDa subunit. (294 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
atad5ATPase family AAA domain-containing protein 5 isoform X1. (1798 aa)
spata5l1Spermatogenesis-associated protein 5-like protein 1. (764 aa)
polhDNA polymerase eta. (299 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
rfc5Replication factor C subunit 5. (339 aa)
rcbtb1RCC1 and BTB domain-containing protein 1. (531 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (540 aa)
LOC108273255ATPase family AAA domain-containing protein 5-like. (927 aa)
rchy1RING finger and CHY zinc finger domain-containing protein 1. (240 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (297 aa)
rfc2Replication factor C subunit 2. (357 aa)
ufd1Ubiquitin fusion degradation protein 1 homolog isoform X2. (308 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (606 aa)
rfc1Replication factor C subunit 1. (1129 aa)
meiobMeiosis-specific with OB domain-containing protein. (466 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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