29 items (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	anapc2	Anaphase-promoting complex subunit 2 isoform X2; Belongs to the cullin family. (804 aa)
	fzr1	Fizzy-related protein homolog isoform X1. (496 aa)
	ENSIPUP00000002488	annotation not available (80 aa)
	cdc14a	Dual specificity protein phosphatase CDC14A isoform X1. (689 aa)
	bicra	Glioma tumor suppressor candidate region gene 1 protein isoform X1. (1765 aa)
	LOC108272957	Ubiquitin-conjugating enzyme E2 E2-like; Belongs to the ubiquitin-conjugating enzyme family. (210 aa)
	fam89a	Protein FAM89A. (171 aa)
	anapc4	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family. (773 aa)
	ube2s	Ubiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (228 aa)
	anapc16	Anaphase-promoting complex subunit 16. (84 aa)
	cdc23	Cell division cycle protein 23 homolog. (585 aa)
	anapc10	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (185 aa)
	ENSIPUP00000002499	annotation not available (78 aa)
	cdc20	Cell division cycle protein 20 homolog. (538 aa)
	anapc15	Anaphase-promoting complex subunit 15. (165 aa)
	bicral	GLTSCR1-like protein. (836 aa)
	tm7sf3	Transmembrane 7 superfamily member 3 isoform X1. (562 aa)
	LOC108268046	Fizzy-related protein homolog. (486 aa)
	LOC108272959	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	LOC108280911	Fizzy-related protein homolog isoform X1. (495 aa)
	cdc26	Anaphase-promoting complex subunit CDC26 isoform X1. (86 aa)
	anapc1	Anaphase-promoting complex subunit 1 isoform X1. (1959 aa)
	cdc27	Cell division cycle protein 27 homolog isoform X1. (834 aa)
	anapc5	Anaphase-promoting complex subunit 5. (767 aa)
	anapc11	Anaphase-promoting complex subunit 11 isoform X1. (88 aa)
	LOC108256709	Ubiquitin-conjugating enzyme E2 E2; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	cdc16	Cell division cycle protein 16 homolog isoform X1. (611 aa)
	ube2c	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
	anapc7	Anaphase-promoting complex subunit 7. (565 aa)

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000002488	LOC108256709	ENSIPUP00000002488	ENSIPUP00000034802	annotation not available	Ubiquitin-conjugating enzyme E2 E2; Belongs to the ubiquitin-conjugating enzyme family.	0.605
ENSIPUP00000002488	LOC108268046	ENSIPUP00000002488	ENSIPUP00000016000	annotation not available	Fizzy-related protein homolog.	0.801
ENSIPUP00000002488	LOC108272957	ENSIPUP00000002488	ENSIPUP00000017185	annotation not available	Ubiquitin-conjugating enzyme E2 E2-like; Belongs to the ubiquitin-conjugating enzyme family.	0.605
ENSIPUP00000002488	LOC108272959	ENSIPUP00000002488	ENSIPUP00000017223	annotation not available	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family.	0.605
ENSIPUP00000002488	LOC108280911	ENSIPUP00000002488	ENSIPUP00000024590	annotation not available	Fizzy-related protein homolog isoform X1.	0.801
ENSIPUP00000002488	anapc1	ENSIPUP00000002488	ENSIPUP00000027434	annotation not available	Anaphase-promoting complex subunit 1 isoform X1.	0.948
ENSIPUP00000002488	anapc10	ENSIPUP00000002488	ENSIPUP00000003240	annotation not available	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.952
ENSIPUP00000002488	anapc11	ENSIPUP00000002488	ENSIPUP00000033404	annotation not available	Anaphase-promoting complex subunit 11 isoform X1.	0.946
ENSIPUP00000002488	anapc15	ENSIPUP00000002488	ENSIPUP00000021799	annotation not available	Anaphase-promoting complex subunit 15.	0.943
ENSIPUP00000002488	anapc16	ENSIPUP00000002488	ENSIPUP00000014555	annotation not available	Anaphase-promoting complex subunit 16.	0.938
ENSIPUP00000002488	anapc2	ENSIPUP00000002488	ENSIPUP00000024329	annotation not available	Anaphase-promoting complex subunit 2 isoform X2; Belongs to the cullin family.	0.946
ENSIPUP00000002488	anapc4	ENSIPUP00000002488	ENSIPUP00000013421	annotation not available	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.948
ENSIPUP00000002488	anapc7	ENSIPUP00000002488	ENSIPUP00000013945	annotation not available	Anaphase-promoting complex subunit 7.	0.949
ENSIPUP00000002488	bicra	ENSIPUP00000002488	ENSIPUP00000000240	annotation not available	Glioma tumor suppressor candidate region gene 1 protein isoform X1.	0.839
ENSIPUP00000002488	bicral	ENSIPUP00000002488	ENSIPUP00000021875	annotation not available	GLTSCR1-like protein.	0.839
ENSIPUP00000002488	cdc16	ENSIPUP00000002488	ENSIPUP00000034952	annotation not available	Cell division cycle protein 16 homolog isoform X1.	0.948
ENSIPUP00000002488	cdc20	ENSIPUP00000002488	ENSIPUP00000021292	annotation not available	Cell division cycle protein 20 homolog.	0.863
ENSIPUP00000002488	cdc23	ENSIPUP00000002488	ENSIPUP00000003694	annotation not available	Cell division cycle protein 23 homolog.	0.951
ENSIPUP00000002488	cdc26	ENSIPUP00000002488	ENSIPUP00000026575	annotation not available	Anaphase-promoting complex subunit CDC26 isoform X1.	0.930
ENSIPUP00000002488	cdc27	ENSIPUP00000002488	ENSIPUP00000028379	annotation not available	Cell division cycle protein 27 homolog isoform X1.	0.948