STRINGSTRING
uba52 uba52 nfkbia nfkbia sqstm1 sqstm1 irak1 irak1 LOC108276493 LOC108276493 LOC108258222 LOC108258222 rps27a rps27a LOC108273578 LOC108273578 gsap gsap traf6 traf6 ngf ngf ngfr ngfr ikbkb ikbkb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uba52ubiquitin-60S ribosomal protein L40 isoform X1. (128 aa)
nfkbiaNF-kappa-B inhibitor alpha. (320 aa)
sqstm1Sequestosome-1. (460 aa)
irak1Interleukin-1 receptor-associated kinase 1 isoform X4. (718 aa)
LOC108276493Neurotrophin-7-like; Belongs to the NGF-beta family. (211 aa)
LOC108258222NF-kappa-B inhibitor alpha-like. (308 aa)
rps27aUbiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...] (156 aa)
LOC108273578Tumor necrosis factor receptor superfamily member 16-like. (409 aa)
gsapGamma-secretase-activating protein. (877 aa)
traf6TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (540 aa)
ngfBeta-nerve growth factor; Belongs to the NGF-beta family. (197 aa)
ngfrTumor necrosis factor receptor superfamily member 16 isoform X1. (378 aa)
ikbkbInhibitor of nuclear factor kappa-B kinase subunit beta isoform X1. (776 aa)
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.